Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0540 ATGAAGCGGTCAAGAAAATCGAACAGGGTTTCATGGGCGCCTCGATCTAATCTGTGTCAGGTAAAATTGTTCTTATCTGAGGATTGTCCTTCAAAAGTTGGCAAGAAATCCCAAGATCATCTTCAAGCAAAGACATCTCCAATGTTGCCTTCAAGTACTAATGAATGTGATGATGATTTACCACCTGGCTTCGAAGCCAATCACTTCCTAAGGCAATCAAACACTGAACTCTCTAACATTCCTCAGATAAAATGGAAATGCCCTCCTCTGTTTGCTTTGAGCAGTCATTGGCTTGTTGCTGCTGGTGAAGAAAGTAAGGAGAAAGATTCTCAGAAGCTAAGAGACATGAGAGTGCTTGAAGCAGTTTATCCTCGTCTTTCTGCAATTCCTCCTAGCCCTTATGTTCCTTTTGAGGTAGAGAAGGAAGATTATGATGACAACCTCACTCCTCTTATCCCTATGATTCCTATTGAGGAAGAAGAATCTATGGAATACATTACACCTGATGTTGCAGTCCCAATGCTTGCTGAGACTCACACCAATTTGCAGTCACAAAACATGCCACAGCACTTACAAGCAGTAACATCTCCCATAAATTCACAGTGCAAATCTTCCTCTACTACTGATCCTTCATCTATCAGTGGAAAGCCTTCAGCTGGGGTATCTCCTTGTTCTGAGGCAGTTTTCGCCGCAGCTTCTGTTGTCGCGGCAGCCATCATGAAAAGCAATGAACAAGGGAACTTGCTTGATATGGATCTTCTCCTTAAAATTTTTAATGACCCAACAATGATTGGGAAATTAATTAACCAACATAGTACTGCGGCTTCCACTGTTAATGCCTCAAATTCTTTGGGTATACCCACTTCTGCATTGAAACCTGTTGCTTCACCAGCTCCATTACCTGCTTCTGGGCCAAAGCAAACCACTTCATCAGAGCCGTTGTGGAGAACCACCTTTGAAAAGCCAACAATTCAATCTGTTCCAATGTTGACACCTACTTTCGATAAGCCAGCAACTCCACCTGTTCCTTTGTTTAGGCCTCTATCTGGTTTATCAGCAGCAACTCCTACACCCATGCCTCATATGCTGCAAAGACATACCAACCAAAATATTCCCCATATGTCAAATGGAGCAGCATCATTGCTTTCTGCTTTCTCCAGTGAATTGAGCACATTACCATTGCCTTCTGCTTCTGTGAACTTGCATGCAGCTACAACAAACCAGGTGCAATCCACTTCTGGTACTGTGAAGAATGCCAACTATTATAAGAACCTTATTAGGCAGCATGGTGCAGATAAGCAAGATATCCCGGACTCACAAATAGGGAACCGTTATAATAATCTTCAAGACTTGAAATCGGTACATAACATTAAACCAGGGGAAGTGATGTTCAAAACTCAGAAACCAGCTTGCATATACTTTAATAGCTCAAGAGGGTGCAGGAATGGTTCAAGTTGCCCTTATCAGCATGATATGTCAGCTCAGTTGGGTGCTGGTGATGTCCTAATGAGCCAAAGTGCAAAAAGAGTGAAACTTGGACCAGAAATTAAGAGGTGGATATAA 1563 0.4242 MKRSRKSNRVSWAPRSNLCQVKLFLSEDCPSKVGKKSQDHLQAKTSPMLPSSTNECDDDLPPGFEANHFLRQSNTELSNIPQIKWKCPPLFALSSHWLVAAGEESKEKDSQKLRDMRVLEAVYPRLSAIPPSPYVPFEVEKEDYDDNLTPLIPMIPIEEEESMEYITPDVAVPMLAETHTNLQSQNMPQHLQAVTSPINSQCKSSSTTDPSSISGKPSAGVSPCSEAVFAAASVVAAAIMKSNEQGNLLDMDLLLKIFNDPTMIGKLINQHSTAASTVNASNSLGIPTSALKPVASPAPLPASGPKQTTSSEPLWRTTFEKPTIQSVPMLTPTFDKPATPPVPLFRPLSGLSAATPTPMPHMLQRHTNQNIPHMSNGAASLLSAFSSELSTLPLPSASVNLHAATTNQVQSTSGTVKNANYYKNLIRQHGADKQDIPDSQIGNRYNNLQDLKSVHNIKPGEVMFKTQKPACIYFNSSRGCRNGSSCPYQHDMSAQLGAGDVLMSQSAKRVKLGPEIKRWI* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0540 520 ProSiteProfiles Zinc finger C3H1-type profile. 465 493 IPR000571 GO:0046872
Lja2g0540 520 MobiDBLite consensus disorder prediction 31 55 - -
Lja2g0540 520 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 512 - -
Lja2g0540 520 MobiDBLite consensus disorder prediction 194 219 - -
Lja2g0540 520 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0540 Lja-Chr2 4868441 4873394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0540 82 153 Homeobox Transcription Factor Family AT4G02560 48.611 3.36e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja2g0540 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0540 - - adu:107488052 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0540 2 4868441 4873394 Lja2g0540 2 4868441 4873394 ECH
Lja2g0540 2 4868441 4873394 Lja4g3153 4 59603245 59605204 PCT