Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0537 ATGACTGCCGCCGTGGAAAGTGTTACTCCCGCCGTCGAGAAGCCGGTGGAGGAGGTGAAAGCGCCGAAGGAAACCAAGCCTGCGAAGGAGAAGAAGCCGAAAGCCCCCAAAGAGAAGAAACCCAAACAGGGGAAAATCGCTTCACATCCTCCATATTTTCAGATGATCGAGGAGGCGTTGTTGGCTCTGAACGAGAAAGGCGGTTCTAGCCCTTACGCGATCGCGAAATACATGGAGGAGAAGCACAAGTCGGTGCTCCCTGCGAATTTCAAGAAGATTCTGGGTTTGCAGCTGAAGAATCAAGCCGCGAAGGGGAAACTCGTGAAGATCAAGGCTTCGTACAAGCTTTCTGGCGCGAAGAAGGATGGCGCCGGTGCTAAGGTGGCAAAGGCCAAGACAGAGAAGAAGGATGCTGCCGCCGCTAAGGTCGCACCGCGCCAGAAACGAACCAGGGCCGTGACAGCTGTGACCGCTGCCGCTCCGAAGAGCAAGAAGAGCGAGGCGGTGGTTAAGAAGGGTGGGATGAAGAAGAAGACGAGGAAGGTGTCTACGCTTGCGAAGCCGAAACAGCCAAAGTCCATTAGGTCTCCTTCAAAGAGGGCTAGGAAAGCTACTGCTGCGTGA 624 0.5497 MTAAVESVTPAVEKPVEEVKAPKETKPAKEKKPKAPKEKKPKQGKIASHPPYFQMIEEALLALNEKGGSSPYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLSGAKKDGAGAKVAKAKTEKKDAAAAKVAPRQKRTRAVTAVTAAAPKSKKSEAVVKKGGMKKKTRKVSTLAKPKQPKSIRSPSKRARKATAA* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0537 207 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja2g0537 207 SUPERFAMILY "Winged helix" DNA-binding domain 47 128 IPR036390 -
Lja2g0537 207 PANTHER HISTONE H1 5 205 - -
Lja2g0537 207 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja2g0537 207 CDD H15 47 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja2g0537 207 Gene3D - 44 144 IPR036388 -
Lja2g0537 207 Pfam linker histone H1 and H5 family 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja2g0537 207 PANTHER HISTONE H1 5 205 - -
Lja2g0537 207 MobiDBLite consensus disorder prediction 16 34 - -
Lja2g0537 207 MobiDBLite consensus disorder prediction 1 49 - -
Lja2g0537 207 MobiDBLite consensus disorder prediction 137 207 - -
Lja2g0537 207 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja2g0537 207 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja2g0537 207 PRINTS Histone H5 signature 136 150 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja2g0537 207 PRINTS Histone H5 signature 186 205 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lja2g0537 207 MobiDBLite consensus disorder prediction 193 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0537 Lja-Chr2 4853327 4854408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0537 50 129 Single Myb Histone (SMH) Gene Family AT1G72740 37.500 3.56e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0537 K11275 - gmx:100500169 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0537 2 4853327 4854408 Lja2g0537 2 4853327 4854408 ECH