Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0535 ATGATGGAGTCAATGGAGTCATGTGTCCCACCTGGTTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTCAGAAAGAAAATAGCTTCTCAGAAGATTGACCTTGATGTTATCAGAGAGATAGATCTATACCGTATTGAACCATGGGATCTCATAGAGAGATGCAGGATTGGGTATGAAGAGCAGAGTGAATGGTATTTTTTCAGCCACAAGGACAAGAAGTATCCAACAGGGACAAGAACTAACAGAGCTACCATGGCTGGGTTCTGGAAGGCAACAGGAAGAGACAAGGCAGTGTATGACAAGATGAAATTGATTGGAATGAGGAAGACACTTGTTTTCTACAAAGGAAGAGCACCTAATGGACAGAAAACTGACTGGATCATGCATGAGTACAGGCTTGAAACTGATGAAAATGGACCTCCACAGGAAGAAGGGTGGGTTGTGTGCAGGGCATTCAAGAAAAAAACTACCAACAGCCAAACAAAGACCATGGAAGGATGGGATTCAAGCTACTTCTATGATGAAGCAAGTGTGGTAAGCTCAGTGGTGGATCCACTTGATCTCATCTCAAGGCAACCTCCTCAAAGATTTTTAGCTCAAAGTTTCATGTGCAAGCAAGAGATAGAAGCAGAAAACTTGAGACATCACATGAATCCAGAACAATTTATACAGCTTCCTCAGCTAGAAAGCCCATCAGTGCCATTAATGAAGAGGCCAAGCACAGTAGTGTCTCTTGTATCAGACAACAACAATGAAGATCATGATGATCAAAACAGGTTATTATTATCCAACAAGAAAGTGACTGATTGGAGAGATCTTGACAAGTTTGTGGCTTCTCAACTGAGTCAAGAAACTGAAGGACTTCCAAGCTTTGAAAACCATGGTGGCTCAGACATGGCATTGTTTGAAGGAACCAAGCTAAGCCCGTTTCTAAGTACAAGCTCAGACTGTGATATTGGGATATGCGTGTTTGAAAAATGA 993 0.4199 MMESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLIERCRIGYEEQSEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETDENGPPQEEGWVVCRAFKKKTTNSQTKTMEGWDSSYFYDEASVVSSVVDPLDLISRQPPQRFLAQSFMCKQEIEAENLRHHMNPEQFIQLPQLESPSVPLMKRPSTVVSLVSDNNNEDHDDQNRLLLSNKKVTDWRDLDKFVASQLSQETEGLPSFENHGGSDMALFEGTKLSPFLSTSSDCDIGICVFEK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0535 330 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Lja2g0535 330 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 291 - -
Lja2g0535 330 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Lja2g0535 330 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 5 291 - -
Lja2g0535 330 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Lja2g0535 330 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0535 Lja-Chr2 4832500 4835635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0535 2 329 NAC Transcription Factor Family AT2G18060 63.661 2.90e-157 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g0535 NAM 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0535 - - aprc:113869508 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0535 2 4832500 4835635 Lja2g0535 2 4832500 4835635 ECH