Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0533 ATGTCTTCGCTTTTTCTTCTCCTCATGGTGCTATGCGCACCGTTCTTATCATGCGCCGTAACCGTCACTGAGATCCAGGCCTTGACATCCTTCAAGCTCAACCTCCACGATCCTCTGCAAGCTCTCGACAGTTGGGATCCCTCCTCGCCGGCGGCGCCCTGTGACTGGCGCGGTGTTTCCTGCTCCGACGACCGAGTCACCGAACTGCGTTTGCCTCGCCTTCAACTCGGTGGCAGACTCACTGACCGTCTCTCTGAGCTTCGCATGCTGCGGAAGATTAGCCTCCGTTCCAACTTCTTCAACGGAACCATTCCGTCATCTCTCTCGAAATGCACGCTGCTACGCTCCGTTTTCCTGCAGGACAACTCATTCTCCGGTAACTTCCCGGCGGAGATCGGAAACCTCACCCGCCTTCAGATTCTCAACGTCGCGCAAAACCACCTCTCCGGCAGCCTCCCCGGCGAGCTTCCGGTCACTCTCAAGTACCTTGACCTCTCATCAAACGCATTCTCCGGCGAGATTCCTAGCGCCATAGCTAACCTCTCTCAGGTTCAGCTCATCAACCTCTCCTACAACCATCTCTCCGGTGAGATTCCGGCGAGCTTGGGAGAGCTTCAGCAGCTGCAGTACCTCTGGCTTGACCACAACTTCATAGAAGGAACTCTGCCTTCGGCGCTCGCTAACTGCTCCTCGCTCGTCCATCTGAGCGCGGAGGAAAACGCACTAGGCGGCGTGGTCCCGTCGGCGATTTCGGCGCTTCCGAAGCTTCAGGTGATGTCTCTGTCTCAGAACAATTTCACTGGCTCCGTTCCCGCTTCCGTTTTCTGCAACGTTTCGGCCTACGCGCCGTCGCTTCGGATTGTTCAGCTTGGATTCAATAGGTTCACGGATTTCGTTGGGCCTGAAACAAACACATGTTTCAGTGTTCTTCAGATTCTGGATGTTCAACACAACCACATAAAGGGCACGTTTCCCTTGTGGTTAACCAAGGTAACCACGTTGACGACGCTTGATGTTTCCAGCAATGCACTTTCCGGCGAGATTCCGCCGGAGATAGGAAACCTCGCCATGTTGACGGAGTTGAGGGTGGCTAACAATTCCTTCACCGGCGCCATTCCGGTGGAAATCAAGAAATGCAGTCTCCTGAGTGTTGTTGATTTTGAAGGCAACGATTTCGGCGGAGAAGTCCCTTTGTTTTTCGGCGAAATGGCGGGTCTGAAGGTGCTATCACTTGGTGGGAATCACTTCTCTGGCTCAGTTCCGGTGAGTTTTGGTAACCTTTCCTTTCTTGAAACATTGAATTTGAGAGGCAATAGCTTAAATGGAAATATTCCTGAGATGATAATGAAATTGAGCAATTTGACAACACTGGACCTTAGTGGAAACAAGTTTACTGGTCAGATTTATGCTAGTGTTGGGAATCTAAATCAATTGGTGGTTCTCAATCTGAGTGGCAATGGCTTCTCTGGAAAAGTTCCTTCTAGTTTGGGAAACCTTTTCAGGCTAACTACACTTGACCTGAGCAAACAGAATCTCTCTGGAGAGTTACCTTTTGAGCTCTCTGGACTGCCCAATTTGCAAGTGATTGCTCTGCAGGAGAACAAGTTATCTGGGGATGTACCTGAAGGGTTCAGCAGTTTGATGAGCTTGCAATATGTGAATCTCAGCTCCAATGCTTTTTCAGGGCAAGTTCCTGAAAACTATGGCTTTCTTCGTTCACTGCATGTTCTTTCATTGTCTCGTAATCACATCACAGGAGCAATTCCTCCTGAAATTGGAAACTGCTCTGATTTGGAAATTCTTGAGCTTGGATCAAATTCTTTAGCAGGCCATGTTCCTAGTGATCTCTCTCGCCTCACCAATTTGAAGGTGCTTGATTTGGGTGGTAACAATTTAACAGGGGATTTGCCAGGGGACATCTCCAAATGCTTGTCATTAACAGCTTTGTTAGTGGATCACAATGGTCTTTCAGGTAACATATCAGGGTCATTGTCGAATCTATCCAACCTAACAATGCTGGATCTCTCTGCTAACAACCTGAGTGGCGAAATTCCAAGCAACTTCTCCATGATCTCTGGTTTGGTATACTTCAATGTCTCAGGAAATAACCTGGAAGGTGAGATACCTCCAACATTGGGATCAAGGTTCAGCAACCCCTCTGTATTTGCAGATAACCAGGACTTGTGTGGGAAGCCATTGAAAACCAAGTGTGAAAACACAGACAATAAAGACAGAAAGAGGTTGATTGTGTTGGTTGTTATCATAGCATGCGGAGGGCTTCTATTAGTCATGTTTTGCTGCTTCTACATCTTCAGCTTATTGCGATGGCGTAAGAAGCTGAAAGAAAGGGTTTCCGGTGAGAAGAAAAAGAGCCCTGCCAGAGCTAGCTCCGGTGCAAGCGGAGGCCGTCGCAGCAGCGAAAACGGAGGGCCGAAACTAGTGATGTTCAACACCAAAATAACACTAGCTGAAACAATGGAAGCAACAAGACAATTCGATGAAGAAAATGTGCTGAGCAGAACAAAACATGGACTAGTATTCAAAGCCTGCTACAACGATGGAATGGTCCTTTCAATTCGCAGGCTCCCAGATGGATTATCACTAGATGAAAACATCTTCAGAAAAGAAGCTGAATCACTCGGCAAAATCAAGCACAGAAACTTAACCGTTCTCAGAGGCTACTACGCTGGTCCTCCAGACATGAGACTCTTAGTCTACGATTACATGCCAAACGGAAACCTCGCTACGCTTCTCCAAGAAGCTTCTCATCAAGATGGCCATGTTCTAAACTGGCCAATGCGGCACCTCATAGCACTCGGAATCGCTCGTGGCTTAGCCTTCATCCACCAATCTTCAATGGTTCACGGTGACGTGAAACCGCAGAGTGTACTATTCGATGCAGACTTTGAAGCGCACTTATCAGATTTCGGGTTAGACCAGCTAACAATAGCAGCAGCCACTTCAACAGAAGCAGCCTCCACCTCAACCTCCGCCGGCACGGTGGGTTATATCTCGCCGGAAGCAATCTTGACCGGAGAAGCATCAAAGGAGTCTGACGTGTACAGCTTTGGCATCGTGCTGCTGGAGCTTCTAACAGGAAAGCGACCCGTGATGTTCACCCAGGACGAAGACATTGTCAAATGGGTCAAGAAGCAATTACAAAAGGGTCAAATCACAGAGCTGTTAGAACCGGGTTTGCTTGAGCTTGACCCGGAATCATCAGAATGGGAAGAGTTTTTGCTTGGTGTGAAAGTCGGGTTGCTCTGCACCGCACCCGACCCGCTTGATCGACCCACAATGGCTGACATCGTTTTCATGCTGGAAGGCTGCCGGGTCGGGCCTGATATCCCATCGTCCGCGGACCCCACCTCGCAAACTTCTCCGGCATAA 3390 0.4906 MSSLFLLLMVLCAPFLSCAVTVTEIQALTSFKLNLHDPLQALDSWDPSSPAAPCDWRGVSCSDDRVTELRLPRLQLGGRLTDRLSELRMLRKISLRSNFFNGTIPSSLSKCTLLRSVFLQDNSFSGNFPAEIGNLTRLQILNVAQNHLSGSLPGELPVTLKYLDLSSNAFSGEIPSAIANLSQVQLINLSYNHLSGEIPASLGELQQLQYLWLDHNFIEGTLPSALANCSSLVHLSAEENALGGVVPSAISALPKLQVMSLSQNNFTGSVPASVFCNVSAYAPSLRIVQLGFNRFTDFVGPETNTCFSVLQILDVQHNHIKGTFPLWLTKVTTLTTLDVSSNALSGEIPPEIGNLAMLTELRVANNSFTGAIPVEIKKCSLLSVVDFEGNDFGGEVPLFFGEMAGLKVLSLGGNHFSGSVPVSFGNLSFLETLNLRGNSLNGNIPEMIMKLSNLTTLDLSGNKFTGQIYASVGNLNQLVVLNLSGNGFSGKVPSSLGNLFRLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGDVPEGFSSLMSLQYVNLSSNAFSGQVPENYGFLRSLHVLSLSRNHITGAIPPEIGNCSDLEILELGSNSLAGHVPSDLSRLTNLKVLDLGGNNLTGDLPGDISKCLSLTALLVDHNGLSGNISGSLSNLSNLTMLDLSANNLSGEIPSNFSMISGLVYFNVSGNNLEGEIPPTLGSRFSNPSVFADNQDLCGKPLKTKCENTDNKDRKRLIVLVVIIACGGLLLVMFCCFYIFSLLRWRKKLKERVSGEKKKSPARASSGASGGRRSSENGGPKLVMFNTKITLAETMEATRQFDEENVLSRTKHGLVFKACYNDGMVLSIRRLPDGLSLDENIFRKEAESLGKIKHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFIHQSSMVHGDVKPQSVLFDADFEAHLSDFGLDQLTIAAATSTEAASTSTSAGTVGYISPEAILTGEASKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQKGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMADIVFMLEGCRVGPDIPSSADPTSQTSPA* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0533 1129 Gene3D Ribonuclease Inhibitor 244 345 IPR032675 -
Lja2g0533 1129 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1125 - -
Lja2g0533 1129 Gene3D Ribonuclease Inhibitor 450 746 IPR032675 -
Lja2g0533 1129 Pfam Leucine Rich repeat 332 347 IPR001611 GO:0005515
Lja2g0533 1129 ProSiteProfiles Protein kinase domain profile. 832 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0533 1129 SUPERFAMILY L domain-like 492 729 - -
Lja2g0533 1129 SUPERFAMILY L domain-like 19 327 - -
Lja2g0533 1129 SMART LRR_sd22_2 619 638 - -
Lja2g0533 1129 SMART LRR_sd22_2 667 690 - -
Lja2g0533 1129 SMART LRR_sd22_2 157 183 - -
Lja2g0533 1129 SMART LRR_sd22_2 595 618 - -
Lja2g0533 1129 SMART LRR_sd22_2 331 357 - -
Lja2g0533 1129 SMART LRR_sd22_2 451 477 - -
Lja2g0533 1129 SMART LRR_sd22_2 205 231 - -
Lja2g0533 1129 Pfam Protein kinase domain 843 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0533 1129 Gene3D Ribonuclease Inhibitor 346 449 IPR032675 -
Lja2g0533 1129 PRINTS Leucine-rich repeat signature 454 467 - -
Lja2g0533 1129 PRINTS Leucine-rich repeat signature 667 680 - -
Lja2g0533 1129 Gene3D Transferase(Phosphotransferase) domain 1 909 1115 - -
Lja2g0533 1129 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Lja2g0533 1129 SMART LRR_typ_2 403 426 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 619 643 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 205 228 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 253 277 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 331 355 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 135 159 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 667 690 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 475 499 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 523 546 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 571 595 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 87 111 IPR003591 -
Lja2g0533 1129 SMART LRR_typ_2 451 471 IPR003591 -
Lja2g0533 1129 Gene3D Phosphorylase Kinase; domain 1 802 908 - -
Lja2g0533 1129 MobiDBLite consensus disorder prediction 785 812 - -
Lja2g0533 1129 SUPERFAMILY RNI-like 245 561 - -
Lja2g0533 1129 Pfam Leucine rich repeat 405 464 IPR001611 GO:0005515
Lja2g0533 1129 Pfam Leucine rich repeat 159 216 IPR001611 GO:0005515
Lja2g0533 1129 Pfam Leucine rich repeat 501 559 IPR001611 GO:0005515
Lja2g0533 1129 Pfam Leucine rich repeat 572 632 IPR001611 GO:0005515
Lja2g0533 1129 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1125 - -
Lja2g0533 1129 SUPERFAMILY Protein kinase-like (PK-like) 810 1116 IPR011009 -
Lja2g0533 1129 Gene3D Ribonuclease Inhibitor 158 243 IPR032675 -
Lja2g0533 1129 Gene3D Ribonuclease Inhibitor 21 157 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0533 Lja-Chr2 4800485 4804250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0533 3 1129 Receptor kinase-like Gene Family AT4G36180 68.453 0.0 1519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Lja2g0533 Pkinase 2.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0533 - - gmx:100795838 1813.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0533 2 4800485 4804250 Lja2g0533 2 4800485 4804250 ECH