Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0528 ATGCGAACTCTTTGTGACGCTTGTGAAAGCGCCGCCGCTATTGTCTTCTGCGCCGCCGATGAAGCTGCACTCTGCCGTGCCTGCGATGAGAAGGTTCATTTGTGCAATAAGCTAGCTAGTCGGCATGTAAGGGTTGGTCTTGCTAGTCCAAGTGATGTGCCACGCTGTGACATATGCGAGAATGCACCTGCTTTCTTCTACTGCGAGACGGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACTCATAGAAGATATCTTCTGTTTCGGCAAAGAATTGAGTTTCCAGGTGATAAATCTAGCCATGCAGAAAACCCAGCTTCACTACCTCTGGAACCAGGTGAGGCTAAGAGAGGACAGAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCTTCAAAATCACATGATGCCACTGGTTCCAATGCCAGAACCTGAAGGTGATGGGCAGTCCAAGATGGAAACTGAAATGTTTGATTTGAACATGAACCCTAACAGAATACACGAACAAGCATCAAATAATCATCAGCATCCATAA 561 0.4563 MRTLCDACESAAAIVFCAADEAALCRACDEKVHLCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHRRYLLFRQRIEFPGDKSSHAENPASLPLEPGEAKRGQNPLPKLKMGEKLQNHMMPLVPMPEPEGDGQSKMETEMFDLNMNPNRIHEQASNNHQHP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0528 186 CDD Bbox1_BBX-like 4 47 - -
Lja2g0528 186 Gene3D Classic Zinc Finger 2 95 - -
Lja2g0528 186 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lja2g0528 186 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lja2g0528 186 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 182 - -
Lja2g0528 186 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Lja2g0528 186 CDD Bbox1_BBX-like 56 96 - -
Lja2g0528 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lja2g0528 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lja2g0528 186 MobiDBLite consensus disorder prediction 105 133 - -
Lja2g0528 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 182 - -
Lja2g0528 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Lja2g0528 186 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0528 Lja-Chr2 4767128 4770807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0528 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 61.413 9.50e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lja2g0528 zf-B_box 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0528 - - gmx:100795117 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0528 2 4767128 4770807 Lja4g3160 4 59731619 59734093 ECH
Lja2g0528 2 4767128 4770807 Lja2g0528 2 4767128 4770807 ECH
Lja1g2328 1 26973512 26974831 Lja2g0528 2 4767128 4770807 ECH
Lja2g0528 2 4767128 4770807 Lja4g3160 4 59731619 59734093 PCT