Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0525 ATGGAGCAATCGCCGGGGTCGAAGGTCGTTAGAGTTGCATCGGAGCTTCTCAACGGTAGGGGTTTAGAGGAGTCGAAGAAGCTCGACGGAGTATCTGGCATGGCGGAGAGACCAGCACCTGCAGTCGCCGACGGTGTCGTTTTGAAGAGGAAGCGAGGTCGGCCGGCTAAGGGGGTTTCTAAAACAGCTCCGCCTCCTCCTCCGCCGAAGCAGCCGGAGGATGAGGAGGACGTTTGCTTCATATGCTTCGATGGCGGGAGCCTCGTCCTCTGCGATCGCCGGGGTTGCCCCAAAGCGTATCATCCTGCATGCGTTAAACGAGATGAAGCGTTCTTCAGTTCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCTCTTGTGAGAAGGCATCCCATTATATGTGCTATACTTGCACGTATTCCGTGTGCAAGGGGTGTATAGATGATGCTGATTTTGTCTTTGTCAGAGGAAATAAGGGTTTGTGTGGAATATGCATGAAAACTATAATGCTGATTGAGGAAAGTGCTGAGGGAAATAAGGACAAGTGTGAAGTGGATTTTGATGACAAGAGCAGTTGGGAGTATCTGTTCAAGGTGTACTGGATGTATTTGAAAGAGAAGCTATCTTTAACGTTTGATGAGATCCTTCGAGCTAGAAACTCTTGCAAAGTTGCTGCTCCTATGAGCTCTAAACTTCACACTCCCCATGAACTTTATCATCTTAAAGATGAAAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACTTAGAATCAAATAATCTGAAAAATAAGAGGCCTAAGAGACAGCAAAAGTTTCTTAATAAAGGCGACTGCGTGGATAGGATAACTTCAGGTAGTGACACTGGCGTGTCATTGCCTGAAGGCACGAAGTGGGCATCCAAGGAGCTCCTAGAGTTTGTTGCACATATGAAAAATGGGGATACATCTCTCCTGACTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGTTAAGAAAAACAATCTCCGTGATCCCCAACAGAAATCCCAAATTGTTTGTGACTTTAGACTATTAAAATTGTTTGGTAAAGCTCGTGTTGGTTACATTGAAATGCTAGTGCTTCTTGAACCCCACTTTCTTGTAAAAGACAATAGTGGTGCGGCAAATACTTTTGGAGCTGCAATTATTGATGCTGCCGCTAATGAAGGAGAGGCCACTGACGATTACAATAAACAGTTGATGTTAGTTAATGATAAAAAATGTATAACGAGTAAAAAGGCTGATGTGCTAGTGCCACAAAATAATCCAGATGCATATGCTGCAGTGGATCCTCACAACATTAACTTGATCTACTTGCGGCGAAATCTGGTGGAGAGTCTAACCATTGATACTGAAAAGATTAATGAGAATGTTGCTGGTTCTTTTGTGCGGATAAGAATTTCTAGTGGTGATCAGAAACAAGATATGTATAGGCTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACATTACCAAATTGGCACAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAAGTCATATCCATAGATGAGATTTCGAATCAGGAATTCTCTGAGGATGAATGCAAGCGTTTGCGTCAGAGTATAAAGTATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTTAACAAAGCATTGACACTCCAAGCAATTAGAGTTAATGATTTGTTGGAAGCTGAGATATTGCGGCTTAATCATCTCCGTGATAGAGCAAATGAAAAGGGGCACAGAAAAGAGCTTAAAGAATGTGTGGAGAAGTTGCAGATACTAAACTCACCAGAGGAACGTCAGCGCAGGCTGCATGAAATTCCAGATGTACACGCGGACCCCAATTTGGACTCATTGTTCGAGTCTGATGAAGATGCTGCAGAGTCAGATGATAGTAAGAAAGCTGGGAATGCAAGGTCAAAACATCCTGGATCTGATAGAAGAGAGAGGGCACCAATTTTCTCCAAAATTTGGGATGGTTTCTTGAACAATGGTGGGTGTAGAACACCAGACTTGACCGCTACCAGTGATCCGATTGGGAATATATGCACATTAAAGAATCACACCAACCCTAATGATGCAGCTATTGATGATAGTAATAATGTGGTTGTGAAATCAGAAGTATCCAGTGTTGCAGTAGACATTTCATCACCGCTCCCCTCTATAGGGACTGAGCAACCATTTGATGATCATTTGAATGATAGATTCTGGCATTATCAGGACCCGAGTGGGAAAGTTCAAGGACCTTTTTCCATGTTGCAGCTGTATAAGTGGAATGCGAGTGGACATTTCCCTCCAGATCTCAGAGTATGGAGGATAGATGAGAAACAAGATAAATCTATATTGTTAACTGATGCACTAAATAGGAAGAGTCCTGAAAACGTTCCATTGACATACAACAGTCAATCGCTTTCTTTAGGAGCCACTGTTTCATTGGTTGATAAAGAAAGCAGTCAGGATGGTGGGAGAAATGCAACAAAGAATGAAATATCTGCAGACAGCCAAATCATTGAACAGAGCAAGGAACAAAAGGTGGATGATACTTCTACCCAGTCTAATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGCATGACCAGCTGCATCTGCATTTACACCCTTCACTACCGTCAACTACCTTTACTGAAAAATTGAATGACAATGCTTCTGATAAAAGGGAGGATCATGGGATTGAAGGAAACTCCGAAGACAATGGGAATTATGGCACTAACAGGACTTCTGATGGTCAGAGTAATAGTGGGCAGAGTTATCAGAAGCGATCAGATAGTGAAGACAATTCGGGGCAAACTTCTGGACAGAACTGGAGGCTCCCTAATATAAATAATTCTACCAATTGCTTGGTTACTACATCTGCTCATGATCCAGGGACAAAAACATCACCACATAAGCTGGGATTTGATCTGCATATACCTCCTTCGCCTCCAGTGTGTAATACAACATGGCAGGCAATCATTGGGGAACCTGATGATTTTGATGAATCAGTTTCTGATCTGTTGGCAGAAGTGGAGGCAATGGAGTCACGTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTGGTGAGGAATTGACTGACGGTTCTAAAAATGATTGTCTCAGTTTTATAGAGCTTAGCCCAATGCTTGATGCCGGTAAAGGTGATGCACTGAGCTCCACAGGTAATTTGCACTTACCATCTCAATCCACGGCAGCAGAGGAATCATTACGGCAAGCACATATCCATCATCAACATCATCAAAGAATATCCGGGGAGCATTCCCCAAGAAGTTCTGAAGTTGTGGTGGGCATGAAGAACATTGGTGTTTCAGGTAATCAATGGGAGTCAGGTGCTGGGAGTTCTCCTATTGTTCCGCCCACGGTAACATTGGGCATGGCGATAGACACGACTTGGAGACTTGGGTTGGAAAATACACACTTGGGATGGGGTGGAATGGATCAGCGGGAGACAAACACGAGTTGGGGAGTAGGGCAGATGGAAGTGCATGAGAACAGAAGCACAAATTCATACACTTCTGTAGTAGCTCCGGGCCTTGGGGATGGCCAAACAAGATATGGCAGCGATCGTTATTCTGTGCCCAGAGATCGGAGTTTTCCTGGTCCTGGCAGGGAATCAGGTTTTGGTAGAGTCAGAACTGCTTCGAACAGACAATCATTGTTTGGTGTTGGGAATGGAGGCTCATATAGGCCTTCTCCCAAAGGACAGCGAGTTTGTAAATTTTATGAAAGTGGGTATTGTAAGAAGGGAGCATCCTGTGGTTACTTGCACCCATGA 3831 0.4375 MEQSPGSKVVRVASELLNGRGLEESKKLDGVSGMAERPAPAVADGVVLKRKRGRPAKGVSKTAPPPPPPKQPEDEEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFSSKAKWNCGWHICSSCEKASHYMCYTCTYSVCKGCIDDADFVFVRGNKGLCGICMKTIMLIEESAEGNKDKCEVDFDDKSSWEYLFKVYWMYLKEKLSLTFDEILRARNSCKVAAPMSSKLHTPHELYHLKDEKGSGSENSCIDLESNNLKNKRPKRQQKFLNKGDCVDRITSGSDTGVSLPEGTKWASKELLEFVAHMKNGDTSLLTQFDVQTLLLEYVKKNNLRDPQQKSQIVCDFRLLKLFGKARVGYIEMLVLLEPHFLVKDNSGAANTFGAAIIDAAANEGEATDDYNKQLMLVNDKKCITSKKADVLVPQNNPDAYAAVDPHNINLIYLRRNLVESLTIDTEKINENVAGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEHYQIGTRTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTLQAIRVNDLLEAEILRLNHLRDRANEKGHRKELKECVEKLQILNSPEERQRRLHEIPDVHADPNLDSLFESDEDAAESDDSKKAGNARSKHPGSDRRERAPIFSKIWDGFLNNGGCRTPDLTATSDPIGNICTLKNHTNPNDAAIDDSNNVVVKSEVSSVAVDISSPLPSIGTEQPFDDHLNDRFWHYQDPSGKVQGPFSMLQLYKWNASGHFPPDLRVWRIDEKQDKSILLTDALNRKSPENVPLTYNSQSLSLGATVSLVDKESSQDGGRNATKNEISADSQIIEQSKEQKVDDTSTQSNGKDESVRSNGWHDQLHLHLHPSLPSTTFTEKLNDNASDKREDHGIEGNSEDNGNYGTNRTSDGQSNSGQSYQKRSDSEDNSGQTSGQNWRLPNINNSTNCLVTTSAHDPGTKTSPHKLGFDLHIPPSPPVCNTTWQAIIGEPDDFDESVSDLLAEVEAMESRGGLESPTSIMKRGEELTDGSKNDCLSFIELSPMLDAGKGDALSSTGNLHLPSQSTAAEESLRQAHIHHQHHQRISGEHSPRSSEVVVGMKNIGVSGNQWESGAGSSPIVPPTVTLGMAIDTTWRLGLENTHLGWGGMDQRETNTSWGVGQMEVHENRSTNSYTSVVAPGLGDGQTRYGSDRYSVPRDRSFPGPGRESGFGRVRTASNRQSLFGVGNGGSYRPSPKGQRVCKFYESGYCKKGASCGYLHP* 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0525 1276 MobiDBLite consensus disorder prediction 23 73 - -
Lja2g0525 1276 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 33 981 - -
Lja2g0525 1276 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 990 1276 - -
Lja2g0525 1276 SUPERFAMILY FYVE/PHD zinc finger 51 123 IPR011011 -
Lja2g0525 1276 SMART PHD_3 78 124 IPR001965 -
Lja2g0525 1276 ProSiteProfiles Plus3 domain profile. 436 569 IPR004343 GO:0003677
Lja2g0525 1276 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 33 981 - -
Lja2g0525 1276 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 990 1276 - -
Lja2g0525 1276 ProSiteProfiles Zinc finger PHD-type profile. 76 142 IPR019787 -
Lja2g0525 1276 Gene3D - 748 806 IPR035445 -
Lja2g0525 1276 CDD PHD5_NSD 78 123 - -
Lja2g0525 1276 Gene3D - 438 566 IPR036128 GO:0003677
Lja2g0525 1276 SMART swib_2 301 379 IPR019835 -
Lja2g0525 1276 MobiDBLite consensus disorder prediction 634 661 - -
Lja2g0525 1276 Coils Coil 570 590 - -
Lja2g0525 1276 Pfam Plus-3 domain 441 544 IPR004343 GO:0003677
Lja2g0525 1276 ProSitePatterns Zinc finger PHD-type signature. 79 139 IPR019786 -
Lja2g0525 1276 Gene3D SWIB/MDM2 domain 292 383 IPR036885 -
Lja2g0525 1276 SUPERFAMILY Plus3-like 437 565 IPR036128 GO:0003677
Lja2g0525 1276 ProSiteProfiles SWIB/MDM2 domain profile. 293 376 IPR003121 -
Lja2g0525 1276 MobiDBLite consensus disorder prediction 639 661 - -
Lja2g0525 1276 SUPERFAMILY CCCH zinc finger 1251 1275 IPR036855 GO:0046872
Lja2g0525 1276 CDD SWIB-MDM2_like 299 374 - -
Lja2g0525 1276 SUPERFAMILY SWIB/MDM2 domain 298 375 IPR036885 -
Lja2g0525 1276 CDD GYF 749 800 IPR003169 GO:0005515
Lja2g0525 1276 ProSiteProfiles GYF domain profile. 746 800 IPR003169 GO:0005515
Lja2g0525 1276 MobiDBLite consensus disorder prediction 827 850 - -
Lja2g0525 1276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 167 IPR013083 -
Lja2g0525 1276 MobiDBLite consensus disorder prediction 900 961 - -
Lja2g0525 1276 MobiDBLite consensus disorder prediction 915 961 - -
Lja2g0525 1276 SMART gyf_5 747 802 IPR003169 GO:0005515
Lja2g0525 1276 MobiDBLite consensus disorder prediction 827 873 - -
Lja2g0525 1276 Pfam GYF domain 749 789 IPR003169 GO:0005515
Lja2g0525 1276 MobiDBLite consensus disorder prediction 1189 1228 - -
Lja2g0525 1276 MobiDBLite consensus disorder prediction 851 873 - -
Lja2g0525 1276 SMART rtf1 436 546 IPR004343 GO:0003677
Lja2g0525 1276 Pfam SWIB/MDM2 domain 301 374 IPR003121 -
Lja2g0525 1276 SUPERFAMILY GYF domain 741 801 IPR035445 -
Lja2g0525 1276 ProSiteProfiles Zinc finger C3H1-type profile. 1251 1276 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0525 Lja-Chr2 4742349 4748791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0525 76 147 PHD Transcription Factor Family AT5G36670 37.838 2.02e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lja2g0525 Plus-3 4.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0525 - - aprc:113869503 1929.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0525 2 4742349 4748791 Lja2g0525 2 4742349 4748791 ECH