Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0519 ATGTTTCCCTTGCCTTCATCCTTCACCACCATTCCTCTCTCAACCACATCCCATTCCCATTCCCATTCCCATTCCCCTCAGGTTGAAACAGAAGAAATGGAGGCTGCTTTGAAGACCAGTTTCAGAAAAGAAATGGTCATTCCCCAAGCTTTCATGGAGGAGCTGTCAGGGTTCAACGGAGGTCAAAATGACGACTTCTCCGTTGACGACCTTCTTGACTTCTCCCACGCCGTGGAAGAAGAAGAACCAGAACAACAACAGCAAAAGGTAGAACAAGAACACTCTGCTTCTGCTTGTGTCTCCCTTCAACAATCCCGTGAAATTTCCAAACCCGCCGCCACCAGTAACCACCACCCTTTCAAAGACGAATTTCCCACCGGCGAGCTCACTGTTCCGGTGGATGATGTAGCGGACTTGGAGTGGCTGTCTCATTTCGTTGAGGATTCTGAATTTTCTGCCGCCGCTGCCTTCCCGGCCGCCGTAGCCTTACCGGTGAACCCAAAGAAGGAGGTGAAGACCGAGCCGGAACCAGAAACCCCGGTTTTTGCCCAGCCCCGTTTCAGAACTTCGGTTCAGACCAAGGCGAGAAGCAAGCGAACGAGGAATGGTGTTCGGGTTTGGCCACTCGGGTCACCGGAGACTTCCTCCAGTTCAACCACCACCTCGTCTTCCTCTTCGTCTCCTTCCAGCCCCTTGCTGATGTGCACCAGTTTTCCCCTGAGCGGCGAGCAGGTTTGCTCGGCAGCGGCAAGGCCTCCTCCGGCGAAGAGACCGAAGAGAATCCGAAACTCCTGTTCCGACCAGGCGGCGCCACGGCGGTGCAGCCATTGCGGCGTGCAGAAGACCCCACAGTGGAGGACTGGGCCACACGGAGCGAAAACGCTCTGCAATGCTTGTGGGGTCCGGTTCAAGTCGGGTCGGCTCTTACCCGAATACAGACCCGCTTGCAGCCCCACATTCTCCAGTGAATTGCACTCAAACCACCACCGGAAAGTCTTGGAGATGCGGCGGAAGAAGGAGGAGGGTGAAGTTGAAACCGGTTTGTCAACTGTTATTCCCAGTTTTTGA 1068 0.5478 MFPLPSSFTTIPLSTTSHSHSHSHSPQVETEEMEAALKTSFRKEMVIPQAFMEELSGFNGGQNDDFSVDDLLDFSHAVEEEEPEQQQQKVEQEHSASACVSLQQSREISKPAATSNHHPFKDEFPTGELTVPVDDVADLEWLSHFVEDSEFSAAAAFPAAVALPVNPKKEVKTEPEPETPVFAQPRFRTSVQTKARSKRTRNGVRVWPLGSPETSSSSTTTSSSSSSPSSPLLMCTSFPLSGEQVCSAAARPPPAKRPKRIRNSCSDQAAPRRCSHCGVQKTPQWRTGPHGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEEGEVETGLSTVIPSF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0519 355 MobiDBLite consensus disorder prediction 90 112 - -
Lja2g0519 355 MobiDBLite consensus disorder prediction 209 230 - -
Lja2g0519 355 ProSiteProfiles GATA-type zinc finger domain profile. 268 304 IPR000679 GO:0006355|GO:0043565
Lja2g0519 355 PANTHER GATA TRANSCRIPTION FACTOR 33 343 - -
Lja2g0519 355 SMART GATA_3 268 322 IPR000679 GO:0006355|GO:0043565
Lja2g0519 355 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g0519 355 MobiDBLite consensus disorder prediction 170 230 - -
Lja2g0519 355 PANTHER GATA TRANSCRIPTION FACTOR 33 343 - -
Lja2g0519 355 PIRSF Txn_fac_GATA_plant 33 352 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lja2g0519 355 ProSitePatterns GATA-type zinc finger domain. 274 299 IPR000679 GO:0006355|GO:0043565
Lja2g0519 355 CDD ZnF_GATA 273 321 IPR000679 GO:0006355|GO:0043565
Lja2g0519 355 Gene3D - 263 342 IPR013088 GO:0006355|GO:0008270
Lja2g0519 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 270 331 - -
Lja2g0519 355 MobiDBLite consensus disorder prediction 1 32 - -
Lja2g0519 355 Pfam GATA zinc finger 274 308 IPR000679 GO:0006355|GO:0043565
Lja2g0519 355 MobiDBLite consensus disorder prediction 79 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0519 Lja-Chr2 4674399 4675939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0519 34 354 C2C2-Gata Transcription Factor Family AT5G66320 47.522 6.54e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja2g0519 GATA 1.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0519 - - aprc:113869559 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0519 2 4674399 4675939 Lja4g3167 4 59861026 59862703 ECH
Lja2g0519 2 4674399 4675939 Lja2g0519 2 4674399 4675939 ECH
Lja2g0519 2 4674399 4675939 Lja4g3167 4 59861026 59862703 PCT