Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0517 ATGGGTCGTGGGAAGATTGAGATTAAGTTGATTGAGAACCCAACTAACAGGCAAGTCACCTACTCCAAGCGAAGAAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTTTCCCTCATCATGTTCTCCAAAAACAACAAGATGCATGAATACATCAGCCCTGGCCTTACGACAAAGAGGATTATTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAGGAGATTAACAATAAGCTCAGGAGACAGATCAGGCACAGGTTAGGTGAGGGTTTGGATATGGATGATCTGAGCTTCCAGCAGCTGCGCAAACTTGAAGAGGACATGGTTTCTTCCATAGGGAAAATACGCGAACGCAAGTTCCATGTGATCAAAACTAGGACTGATACCTGTAGGAAGAAGGTTAGAAGCTTGGAGCAGATGAATGGAAATCTCCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTGTTTTGCACGATGAAGGAGACCCGGAATCAGCAGTTGCACTGGCCAACGGTGCCTCCAACCTGTATGCATTCTGTCAACACCATACTCATGTGAATCTTCCTCCTCACCATCACCATGTCCATGGAGAAGATGATCTGCGCCTTGCTTGA 693 0.4459 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKRIIDQYQKTLGDIDLWRSHYEKMLENLKKLKEINNKLRRQIRHRLGEGLDMDDLSFQQLRKLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFVLHDEGDPESAVALANGASNLYAFCQHHTHVNLPPHHHHVHGEDDLRLA* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0517 230 Coils Coil 85 105 - -
Lja2g0517 230 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g0517 230 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Lja2g0517 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lja2g0517 230 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g0517 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja2g0517 230 Gene3D - 14 105 IPR036879 GO:0003677|GO:0046983
Lja2g0517 230 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 230 - -
Lja2g0517 230 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lja2g0517 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja2g0517 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja2g0517 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja2g0517 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja2g0517 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Lja2g0517 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0517 Lja-Chr2 4658310 4660325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0517 1 218 MADS-box Gene Family AT3G54340 50.685 1.44e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja2g0517 K-box 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0517 K09264 - gmx:100784496 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0517 2 4658310 4660325 Lja2g0517 2 4658310 4660325 ECH
Lja2g0517 2 4658310 4660325 Lja4g3173 4 59970314 59974671 ECH