Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0501 ATGGCGGGTTTATTCTCACTAGGTGGTGGTGGCGGAAGAGGGAACGACGCGGAAGATCAACAGCATCACCATCAACAGAACGAGATTCCTCCTCCTCCTGATAGCAGCTTATTCTGGTACAGCAATAAGAATCATGACGACGTCGTTTCCTCTTCTTACAGAGGCTTTGAGATATGGAACCAGCAGCAGCAACATCTGGTCCCTGCTCAGCCGCAACCACGTGCTTTCTTCCAACAAGCTGATCTGTACACCTCCGCCGCGGCGCTAGGTGTTGGGCCGTCGGAGGCGTCGAGATCGGGGAAGAGCGGCGGAAGTGGAGGTGGAGGAGGAGGGGCGAGCTGTCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCCCTCATGTGAGGTGCAGAACTTGCTGCAAGAGCCGAGGGTTTGATTGCCAAACGCATCTCAAGAGCACTTGGGTTCCCGCTTCGAAACGCCGCGAAAGACAACAACAGCAGCAGCAGCAGCTTGTTCCTACAAGGCAGCAGAGAGATCATGGTCATAACGTTCACAACCCCACCTCTTCATCACTCGCTTGCACTCTTCTGCCTCCAAACCCTTCACACTCAGGAGGGTTAGAGGAGGTGAATTTCCCTGCTGTGGTGAGCACTCCGGCGGAGTTCAAGTGTGTGCGGGTTAGCTCCGTGGATGAGGCGGATGAGGAGTACGCTTACTCAACGGCTGTCAACATTGGAGGCCATGTCTTCAGAGGAATTCTCTATGACCATGGGCCAGACGGCAATAGTTACACGGCTGCCGGAGCTGGGAGCAGCTCCTCCACCGGTGGTGGGGTGGTTCAGCCATTGAACCTTATTTCAGCTGCCGGGAACACCACTGCTGTTGGGGCAATTGTCGATCCTTCTTCCTTGTATCCGGCTCCCCTTAACGCATTCATGCCTGCTAGTGGTACGCAATTCTTCCCCCACCCAAGACCTTGA 966 0.5528 MAGLFSLGGGGGRGNDAEDQQHHHQQNEIPPPPDSSLFWYSNKNHDDVVSSSYRGFEIWNQQQQHLVPAQPQPRAFFQQADLYTSAAALGVGPSEASRSGKSGGSGGGGGGASCQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHLKSTWVPASKRRERQQQQQQQLVPTRQQRDHGHNVHNPTSSSLACTLLPPNPSHSGGLEEVNFPAVVSTPAEFKCVRVSSVDEADEEYAYSTAVNIGGHVFRGILYDHGPDGNSYTAAGAGSSSSTGGGVVQPLNLISAAGNTTAVGAIVDPSSLYPAPLNAFMPASGTQFFPHPRP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0501 321 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 113 155 IPR006510 -
Lja2g0501 321 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 321 - -
Lja2g0501 321 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 321 IPR007818 GO:0003700|GO:0006355
Lja2g0501 321 MobiDBLite consensus disorder prediction 92 113 - -
Lja2g0501 321 Pfam Domain of unknown function (DUF702) 111 255 - -
Lja2g0501 321 MobiDBLite consensus disorder prediction 151 195 - -
Lja2g0501 321 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 207 254 IPR006511 -
Lja2g0501 321 MobiDBLite consensus disorder prediction 1 34 - -
Lja2g0501 321 MobiDBLite consensus disorder prediction 151 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0501 Lja-Chr2 4552067 4554515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0501 1 320 C2H2 Transcription Factor Family AT3G51060 46.154 3.44e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lja2g0501 DUF702 1.2e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0501 - - tcc:18610831 314.694