Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0475 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCTGGTGATATAAGAGAATCAGAAATTGAAGATATATTCTACAAGTATGGCCGTATACTGGATATTGAATTGAAGGTTCCACCTCGTCCTCCATGTTATTGCTTTGTCGAGTTTGATAATGCTCGAGATGCAGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGCTGTCGTTTAAGGGTTGAACTTGCACATGGTGGTAGGGGGCCAACCTCAAGTGATCGACGTGGGTATGGTGGTGGTGGTGGCGGTGGCGGCGGCGGCGGTGGCCGTATTGGCCTCTCACGCAATTCTGAATTTAGAGTTATTGTCCGTGGACTCCCGTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAATTGGATGACACTGAATTCAAAAATCCGTGGGCAAGAGGTTACATTCGGGTCAAAAAGTTTGAGAGCAGACGTTCAAGGAGCCTCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAGGTCTTTGGATAGATCTGTATCTAGGTCACGATCTCGATCCAGATCAGCTTCACCAATCAAATCTTCCAGGCCAAGGTCAAGATCGAAATCACGATCACGGTCTGCATCTCCACCCCAGGTGCCGTCTGGTAGTGGTTGA 774 0.4638 MSGRFSRTIYVGNLPGDIRESEIEDIFYKYGRILDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPTSSDRRGYGGGGGGGGGGGGRIGLSRNSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFKNPWARGYIRVKKFESRRSRSLSRSRSPKRVRSRSLDRSVSRSRSRSRSASPIKSSRPRSRSKSRSRSASPPQVPSGSG* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0475 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lja2g0475 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 180 IPR000504 GO:0003723
Lja2g0475 257 Gene3D - 2 115 IPR012677 -
Lja2g0475 257 SMART rrm1_1 117 190 IPR000504 GO:0003723
Lja2g0475 257 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lja2g0475 257 CDD RRM1_SF2_plant_like 8 79 - -
Lja2g0475 257 SUPERFAMILY RNA-binding domain, RBD 6 182 IPR035979 GO:0003676
Lja2g0475 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lja2g0475 257 MobiDBLite consensus disorder prediction 243 257 - -
Lja2g0475 257 MobiDBLite consensus disorder prediction 81 108 - -
Lja2g0475 257 CDD RRM2_SF2_plant_like 116 191 - -
Lja2g0475 257 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 248 - -
Lja2g0475 257 MobiDBLite consensus disorder prediction 193 257 - -
Lja2g0475 257 MobiDBLite consensus disorder prediction 208 222 - -
Lja2g0475 257 Gene3D - 116 192 IPR012677 -
Lja2g0475 257 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 248 - -
Lja2g0475 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0475 Lja-Chr2 4320784 4326296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0475 8 174 Eukaryotic Initiation Factors Gene Family AT4G34110 26.012 6.80e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0475 K12890 - gmx:100786491 370.548