Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0473 ATGAATGATTTGATGACGAGTTCGTTCCTAAGTTATGTTGAACTGAAGAAGCAGGCACAGAAGGATCTTGAAGATGTTGATCTTGACATTGAAGCAGGGAATCTCAACCCCACAGAGGATCCAAACCTCTCTCAATTCTTCCGAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATTACCAATCTCTTATCTGATCTGCAGCAACTTAATGAAGAGACAAAGTCCACTCACAGTGCCAAGGTTCTTCGAGGGCTAAGAGACAGAATGGATTCTGACATGGTTGCTGTTCTTCGCAAGGCAAAGATCATCAAGGCAAGGCTTGAAGTTCTTGATCAATCCAACATAGCCAACCGGAGCATATCAGAATCCTACAAAGAGGGAACTCCAATTGATAGAACTAGAGTGTCTGTCACCAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGATTTTCAGTCCTTGAGGGACAAGATTGTGGCAGATCATAAGGAAGATTTGAAGAGAAGGTACTATACTGCAACTGGGGAGGTTCCAAGTGATGAGGCCATGGAGAAGATGATTTCTGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACGGATGCTGATATGGGTACTCAGGTTCGGCATGAGGCGGTGATGGATATCCAGAGGAGTTTGAACAAGCTTCATCAGGTTTTTCTTGATATGGCAATTCTGGTTGAGACTCAAGGAGAAAAGATGGATACCATTGAGGATAATGTGGTCAATGCTGGTAGCTACATCCATGGTGGGACTAATAATCTATACTATGCCAGCCAGATGAAGAAGAAGAACAGGAAATGGATCTATTGGGTTGTTGCTGTGGTGCTGATTGTTCTGCTGGTGTGCATCATTGCAATGATGTCTTCTTGA 900 0.4333 MNDLMTSSFLSYVELKKQAQKDLEDVDLDIEAGNLNPTEDPNLSQFFREVEAIKVEMEEITNLLSDLQQLNEETKSTHSAKVLRGLRDRMDSDMVAVLRKAKIIKARLEVLDQSNIANRSISESYKEGTPIDRTRVSVTNGLRVKLRDMMNDFQSLRDKIVADHKEDLKRRYYTATGEVPSDEAMEKMISGSLKVEFLAGKTDADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKMDTIEDNVVNAGSYIHGGTNNLYYASQMKKKNRKWIYWVVAVVLIVLLVCIIAMMSS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0473 299 CDD SynN 43 193 IPR006011 GO:0016020
Lja2g0473 299 PANTHER SYNTAXIN-112 3 295 - -
Lja2g0473 299 Pfam Syntaxin 45 240 IPR006011 GO:0016020
Lja2g0473 299 CDD SNARE_syntaxin1-like 209 264 - -
Lja2g0473 299 SUPERFAMILY t-snare proteins 40 260 IPR010989 GO:0016020|GO:0016192
Lja2g0473 299 SMART tSNARE_6 200 267 IPR000727 -
Lja2g0473 299 SMART SynN_4 38 165 IPR006011 GO:0016020
Lja2g0473 299 Gene3D - 38 169 - -
Lja2g0473 299 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Lja2g0473 299 Coils Coil 50 77 - -
Lja2g0473 299 PANTHER SYNTAXIN 3 295 IPR045242 -
Lja2g0473 299 Gene3D - 201 298 - -
Lja2g0473 299 Pfam SNARE domain 242 291 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0473 Lja-Chr2 4301779 4303019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0473 1 299 SNARE and Associated Proteins AT2G18260 58.766 1.29e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0473 K08486 - gmx:112997615 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0473 2 4301779 4303019 Lja2g0473 2 4301779 4303019 ECH