Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0468 ATGTCATTCAAAAGCATAGTGCGAGAACTCAAAGAGATGAGAGATGGGATTGGTAGCACGTCAAGGCGAGGAGGTTCAGGGAGCAGGCATTGGCATAGTCGGACTAAGTCGCACATTGTTCCGGATGTTACTTTAGCTCCGCTTGAACATGTTCAGCAGGGACAGTGGGCAAACCTACCGTTTGATTTGCTTGTGGACATAATCCGGAGGGTTGAAGAGAGCGAGACGACTTGGCCTGCACGTGCCGTCGTTGTTTCTTGTGCTTCAGTCTGTAAATCATGGAGGGCAGTTACTAAAGAGATTGTCAAGACTCCTGAGCAATGTGGAAGGCTTACATTTCCTATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCGTTTCAGTGCTTTATCAGGAGGAACAGAGAGACTTCAACATATTTATTGTACTTTGGACTGGTGCCATCGGAGAATGAGACTGATAAGCTGTTATTAGCTGCTAAAAAGATTAGAAGGGCAACAGGGACAGACTTTATCATATCTTTGGTTGCAGATGATTTTTCTCGGTCCAGCAACACATATATTGGGAAACTCAGGTCAAACTTTTTGGGAACCAAGTTCACTGTATATGACAGCCAACCTCCACATGGAGCTGGAATGCAACTAAATAGTCGGTCTAGTCGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCGGCTGGTAACTATGTTGTTAGCACCATTGCCTATGAGCTGAACGTTCTCCGGACAAGAGGGCCAAGAAGAATGCAGTGCACCATGAACTCCATTCCTATCTCAGCTATCCAGGAAGGGGGCAGTGCGCCAACTCCTACATCATTTCCTCAAATCATTGATAAGCATTTTTCTCCCTCACCAGCGGCAAAAGGAAAAGGTCTAATTAGTGATTTAAACCACGCAACCCTCTCGGAGGTGCCGGTACAGAGTGAAGGCTCACTTGAGGGTCTGGTGCTGAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAGTGCTGGTGCTTGAACTTTAAGGGTCGTGTTACAGTGGCTTCTGTTAAGAATTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTCCTGCGGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGGAAAGACATATTTACCATGGATTACCGCTATCCACTCTCTGCGTTCCAAGCCTTTGCCTTATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1248 0.4615 MSFKSIVRELKEMRDGIGSTSRRGGSGSRHWHSRTKSHIVPDVTLAPLEHVQQGQWANLPFDLLVDIIRRVEESETTWPARAVVVSCASVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPFQCFIRRNRETSTYLLYFGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNTYIGKLRSNFLGTKFTVYDSQPPHGAGMQLNSRSSRRFHSKQVSPRVPAGNYVVSTIAYELNVLRTRGPRRMQCTMNSIPISAIQEGGSAPTPTSFPQIIDKHFSPSPAAKGKGLISDLNHATLSEVPVQSEGSLEGLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFALCLSSFDTKPACE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0468 415 PANTHER TUBBY-RELATED 1 415 - -
Lja2g0468 415 SUPERFAMILY Tubby C-terminal domain-like 105 415 IPR025659 -
Lja2g0468 415 Gene3D Tubby Protein; Chain A 114 415 IPR025659 -
Lja2g0468 415 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Lja2g0468 415 Gene3D - 49 104 - -
Lja2g0468 415 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 415 - -
Lja2g0468 415 Pfam F-box domain 56 103 IPR001810 GO:0005515
Lja2g0468 415 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Lja2g0468 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Lja2g0468 415 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Lja2g0468 415 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lja2g0468 415 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Lja2g0468 415 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Lja2g0468 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Lja2g0468 415 SUPERFAMILY F-box domain 51 99 IPR036047 GO:0005515
Lja2g0468 415 MobiDBLite consensus disorder prediction 14 34 - -
Lja2g0468 415 Pfam Tub family 117 410 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0468 Lja-Chr2 4278194 4281008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0468 1 415 TUB Transcription Factor Family AT2G18280 63.942 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja2g0468 Tub 7.9e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0468 K19600 - gmx:100798958 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0468 2 4278194 4281008 Lja2g0468 2 4278194 4281008 ECH
Lja2g0468 2 4278194 4281008 Lja4g3215 4 60734399 60737878 ECH
Lja2g0468 2 4278194 4281008 Lja4g3215 4 60734399 60737878 PCT