LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g0467	ATGAGAACTGATAGTGGTGAAGAAGGGGACAAGTTACAGAATCCCCGTTCCTTTCAGGTACATAGTAAGTTGTGCATAGAACTAGTGAGATTAGTGGACAGAATCTCAAAAATATTTCCAGACATAGAGGCGGCACGGCCGCGATGCTCATCAGGAATAGAGTCTCTATGCTTGCTCAACAACTCAATTGATAGAGCCAAACTACTTCTGCAACATTGCTCCGAATGCAGCAAACTCTACCTGGCTGTGACAGGGGATACAGTACTCTTAAGATGCCAAAAGGTAGCAAGGTTATTAGAGCAAAGCTTAATCCAGATTCAGGATATGGTTCCAGTTATGCTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTACTACATTTGTTCTGGACTCAGCTGAAGAAGAGGCTGGAAGGGTTGTGAGAGAGTTGCTTCAGCAAGGTACTTCAACCTCAGACTCAGTGGATGATTCCGAAGTTAAAGCTCTTCAGTTCGCAGCACCACGACTGAACATAACATCCCGAAAGGCCATCGTAGTAGAGAGCCGATCTATCAAGAAGTTGTATGATAAAGTTGGACCAACTGACCAGAAAAAGAAGGTGATCTTGAGATATCTTCTGTATCTACTGAAAAAACACGGGAATTCTATCGCGGTAGAACAATCGGTGACGGCCTATTCTCGTCATGAAGAACCAACAGCAAGAAAGAGTTCCAATCATGATTCTCCACGGAGCCATCATGTTGAACCACAGCCATGTTTGAACTATGGTCAGAACCGAACTCATACCAATGAGTTGGGTATTGCACCTCCTGAGGAATATATATGCCCAATATCTTCAAGGTTGATGTATGATCCTGTTATCATTGCTTCCGGAATCACTTATGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAAAGTTGTATGCCCAAAAACCAATAAGATGTTAACACATATGACATTGACTCCAAATGTTGTCATGAAGGACCTAATATCAAAGTGGTGCAGCAACATTGGAGTCTCCATTCCTGACCCAACTAGGCAAGCAGAAGATTCTTACCCATGGGATGCTTCAATCACTTCCGTTCAGAGTTTTGGAAGTTATTTCAATGATTTGAACTTGCCAATGGATCATAGTAACATGTCAATTGGATCATTGGATAGTAGTTTTAGTTCAGATGCCTCACGAGTTAAGATCGTTCAGGACTTAAATTCGATCTCGATCAAGGCTAGTGACAAGCCTCACAGCCACATTCATCGAGCTCGTGAGGGGATGCGTGATACAGACTTGATGCTGTTGCCTAAACTCCATGATCTTCAATGGGATTCTCAGTGCAAGGTCATTGAAGATCTGAAAGATCATTTGAAAAGCAACTGTCAAGCTTTTTCTTCTGTGTCACCAGAGAATTTTGTTGAACCGCTGGTCAGATTTCTTAGCAAATCATATGATCTGCATGATTTAAAAGCGATGAGAGCTGGAACTCAGCTTCTGTTGGAATTTGTGAACAATTGCAGAAATGGAATGACTAATTTAAGTGAAGACACATTCATTACATTGGCTAGTTTTCTTGATTCAGAAGTGATAGGGGATGTTCTTACCATAATGGAAGAGATGTCTGTGCATGGCTACAGTAAAGCTAAACTTGCAGCATCCAGTTCACTCACTTCTCTTTTAAATATACTCGATTCTGGTAACAAAGAGTTCCAACAAAAAGCTATTAGAATAATGTACAACTTGTCCTTCAATGGGGAAGTTTTCCCCCACATGCTATCTCTTAAGTGCATCCCAAAATTGCTGCCATTTTTCAAAGACAGAGCTGTTTTGAGATACTGCATACAAATATTGAAAAATATATGTGATACTGAAGAGGGTAGAAACTCTGTTGCTGAAACTAAGGGATGCATATCTTCTGTTGCTGAAATACTTGAGACAGGAAGTAATGAGGAACAAGAACATGCACTTGCTGTTCTAGTGTCTTTATGCTCTAAACGTGTGGATTACTGTAAGCTGGTTATGGATGAGGATGTTATTGCTCCTCTTTTTTACATCTCCCAGAATGGAAATGATAAAGGAAAGGAAAGTGCCTTGGAACTGCTCAATCTTTTGAGAGATGTTAAATGTGTTGAGAATGAAGATTGCTCTGAACCAAATACCAACAACAACTCCTCTCAAGGTTCCAGCAGTCACCCTGAAGAAAATAAACCATCAAAGAGTTCTTCCACATTTCGGAAGAAACTAGCAGTGTTCTCAAAATCCATTTCACATGCATCAAAAACCAAAAAGTGA	2298	0.4051	MRTDSGEEGDKLQNPRSFQVHSKLCIELVRLVDRISKIFPDIEAARPRCSSGIESLCLLNNSIDRAKLLLQHCSECSKLYLAVTGDTVLLRCQKVARLLEQSLIQIQDMVPVMLAVEVSRIIDDLECTTFVLDSAEEEAGRVVRELLQQGTSTSDSVDDSEVKALQFAAPRLNITSRKAIVVESRSIKKLYDKVGPTDQKKKVILRYLLYLLKKHGNSIAVEQSVTAYSRHEEPTARKSSNHDSPRSHHVEPQPCLNYGQNRTHTNELGIAPPEEYICPISSRLMYDPVIIASGITYERMWIKKWFDEGKVVCPKTNKMLTHMTLTPNVVMKDLISKWCSNIGVSIPDPTRQAEDSYPWDASITSVQSFGSYFNDLNLPMDHSNMSIGSLDSSFSSDASRVKIVQDLNSISIKASDKPHSHIHRAREGMRDTDLMLLPKLHDLQWDSQCKVIEDLKDHLKSNCQAFSSVSPENFVEPLVRFLSKSYDLHDLKAMRAGTQLLLEFVNNCRNGMTNLSEDTFITLASFLDSEVIGDVLTIMEEMSVHGYSKAKLAASSSLTSLLNILDSGNKEFQQKAIRIMYNLSFNGEVFPHMLSLKCIPKLLPFFKDRAVLRYCIQILKNICDTEEGRNSVAETKGCISSVAEILETGSNEEQEHALAVLVSLCSKRVDYCKLVMDEDVIAPLFYISQNGNDKGKESALELLNLLRDVKCVENEDCSEPNTNNNSSQGSSSHPEENKPSKSSSTFRKKLAVFSKSISHASKTKK*	766

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja2g0467	765	MobiDBLite	consensus disorder prediction	230	259	-	-
Lja2g0467	765	Pfam	Armadillo-like	522	629	IPR006911	-
Lja2g0467	765	Gene3D	-	435	724	IPR011989	-
Lja2g0467	765	SUPERFAMILY	RING/U-box	264	348	-	-
Lja2g0467	765	ProSiteProfiles	U-box domain profile.	271	345	IPR003613	GO:0004842\|GO:0016567
Lja2g0467	765	SMART	Ubox_2	275	338	IPR003613	GO:0004842\|GO:0016567
Lja2g0467	765	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	257	343	IPR013083	-
Lja2g0467	765	Pfam	U-box domain	273	340	IPR003613	GO:0004842\|GO:0016567
Lja2g0467	765	PANTHER	U BOX DOMAIN-CONTAINING	2	744	-	-
Lja2g0467	765	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	2	744	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g0467	Lja-Chr2	4273154	4277883	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g0467	1	742	U-box Gene Family	AT4G36550	37.778	8.31e-146	442

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g0467	-		-	mtr:MTR_5g020570	1047.34

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lja2g0467	2	4273154	4277883	Lja2g0467	2	4273154	4277883	ECH
Lja2g0467	2	4273154	4277883	Lja4g3219	4	60764490	60769824	ECH
Lja2g0467	2	4273154	4277883	Lja4g3219	4	60764490	60769824	PCT

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