Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0467 ATGAGAACTGATAGTGGTGAAGAAGGGGACAAGTTACAGAATCCCCGTTCCTTTCAGGTACATAGTAAGTTGTGCATAGAACTAGTGAGATTAGTGGACAGAATCTCAAAAATATTTCCAGACATAGAGGCGGCACGGCCGCGATGCTCATCAGGAATAGAGTCTCTATGCTTGCTCAACAACTCAATTGATAGAGCCAAACTACTTCTGCAACATTGCTCCGAATGCAGCAAACTCTACCTGGCTGTGACAGGGGATACAGTACTCTTAAGATGCCAAAAGGTAGCAAGGTTATTAGAGCAAAGCTTAATCCAGATTCAGGATATGGTTCCAGTTATGCTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTACTACATTTGTTCTGGACTCAGCTGAAGAAGAGGCTGGAAGGGTTGTGAGAGAGTTGCTTCAGCAAGGTACTTCAACCTCAGACTCAGTGGATGATTCCGAAGTTAAAGCTCTTCAGTTCGCAGCACCACGACTGAACATAACATCCCGAAAGGCCATCGTAGTAGAGAGCCGATCTATCAAGAAGTTGTATGATAAAGTTGGACCAACTGACCAGAAAAAGAAGGTGATCTTGAGATATCTTCTGTATCTACTGAAAAAACACGGGAATTCTATCGCGGTAGAACAATCGGTGACGGCCTATTCTCGTCATGAAGAACCAACAGCAAGAAAGAGTTCCAATCATGATTCTCCACGGAGCCATCATGTTGAACCACAGCCATGTTTGAACTATGGTCAGAACCGAACTCATACCAATGAGTTGGGTATTGCACCTCCTGAGGAATATATATGCCCAATATCTTCAAGGTTGATGTATGATCCTGTTATCATTGCTTCCGGAATCACTTATGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAAAGTTGTATGCCCAAAAACCAATAAGATGTTAACACATATGACATTGACTCCAAATGTTGTCATGAAGGACCTAATATCAAAGTGGTGCAGCAACATTGGAGTCTCCATTCCTGACCCAACTAGGCAAGCAGAAGATTCTTACCCATGGGATGCTTCAATCACTTCCGTTCAGAGTTTTGGAAGTTATTTCAATGATTTGAACTTGCCAATGGATCATAGTAACATGTCAATTGGATCATTGGATAGTAGTTTTAGTTCAGATGCCTCACGAGTTAAGATCGTTCAGGACTTAAATTCGATCTCGATCAAGGCTAGTGACAAGCCTCACAGCCACATTCATCGAGCTCGTGAGGGGATGCGTGATACAGACTTGATGCTGTTGCCTAAACTCCATGATCTTCAATGGGATTCTCAGTGCAAGGTCATTGAAGATCTGAAAGATCATTTGAAAAGCAACTGTCAAGCTTTTTCTTCTGTGTCACCAGAGAATTTTGTTGAACCGCTGGTCAGATTTCTTAGCAAATCATATGATCTGCATGATTTAAAAGCGATGAGAGCTGGAACTCAGCTTCTGTTGGAATTTGTGAACAATTGCAGAAATGGAATGACTAATTTAAGTGAAGACACATTCATTACATTGGCTAGTTTTCTTGATTCAGAAGTGATAGGGGATGTTCTTACCATAATGGAAGAGATGTCTGTGCATGGCTACAGTAAAGCTAAACTTGCAGCATCCAGTTCACTCACTTCTCTTTTAAATATACTCGATTCTGGTAACAAAGAGTTCCAACAAAAAGCTATTAGAATAATGTACAACTTGTCCTTCAATGGGGAAGTTTTCCCCCACATGCTATCTCTTAAGTGCATCCCAAAATTGCTGCCATTTTTCAAAGACAGAGCTGTTTTGAGATACTGCATACAAATATTGAAAAATATATGTGATACTGAAGAGGGTAGAAACTCTGTTGCTGAAACTAAGGGATGCATATCTTCTGTTGCTGAAATACTTGAGACAGGAAGTAATGAGGAACAAGAACATGCACTTGCTGTTCTAGTGTCTTTATGCTCTAAACGTGTGGATTACTGTAAGCTGGTTATGGATGAGGATGTTATTGCTCCTCTTTTTTACATCTCCCAGAATGGAAATGATAAAGGAAAGGAAAGTGCCTTGGAACTGCTCAATCTTTTGAGAGATGTTAAATGTGTTGAGAATGAAGATTGCTCTGAACCAAATACCAACAACAACTCCTCTCAAGGTTCCAGCAGTCACCCTGAAGAAAATAAACCATCAAAGAGTTCTTCCACATTTCGGAAGAAACTAGCAGTGTTCTCAAAATCCATTTCACATGCATCAAAAACCAAAAAGTGA 2298 0.4051 MRTDSGEEGDKLQNPRSFQVHSKLCIELVRLVDRISKIFPDIEAARPRCSSGIESLCLLNNSIDRAKLLLQHCSECSKLYLAVTGDTVLLRCQKVARLLEQSLIQIQDMVPVMLAVEVSRIIDDLECTTFVLDSAEEEAGRVVRELLQQGTSTSDSVDDSEVKALQFAAPRLNITSRKAIVVESRSIKKLYDKVGPTDQKKKVILRYLLYLLKKHGNSIAVEQSVTAYSRHEEPTARKSSNHDSPRSHHVEPQPCLNYGQNRTHTNELGIAPPEEYICPISSRLMYDPVIIASGITYERMWIKKWFDEGKVVCPKTNKMLTHMTLTPNVVMKDLISKWCSNIGVSIPDPTRQAEDSYPWDASITSVQSFGSYFNDLNLPMDHSNMSIGSLDSSFSSDASRVKIVQDLNSISIKASDKPHSHIHRAREGMRDTDLMLLPKLHDLQWDSQCKVIEDLKDHLKSNCQAFSSVSPENFVEPLVRFLSKSYDLHDLKAMRAGTQLLLEFVNNCRNGMTNLSEDTFITLASFLDSEVIGDVLTIMEEMSVHGYSKAKLAASSSLTSLLNILDSGNKEFQQKAIRIMYNLSFNGEVFPHMLSLKCIPKLLPFFKDRAVLRYCIQILKNICDTEEGRNSVAETKGCISSVAEILETGSNEEQEHALAVLVSLCSKRVDYCKLVMDEDVIAPLFYISQNGNDKGKESALELLNLLRDVKCVENEDCSEPNTNNNSSQGSSSHPEENKPSKSSSTFRKKLAVFSKSISHASKTKK* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0467 765 MobiDBLite consensus disorder prediction 230 259 - -
Lja2g0467 765 Pfam Armadillo-like 522 629 IPR006911 -
Lja2g0467 765 Gene3D - 435 724 IPR011989 -
Lja2g0467 765 SUPERFAMILY RING/U-box 264 348 - -
Lja2g0467 765 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Lja2g0467 765 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Lja2g0467 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 343 IPR013083 -
Lja2g0467 765 Pfam U-box domain 273 340 IPR003613 GO:0004842|GO:0016567
Lja2g0467 765 PANTHER U BOX DOMAIN-CONTAINING 2 744 - -
Lja2g0467 765 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 744 - -
Lja2g0467 765 CDD RING-Ubox_PUB 276 318 IPR045210 -
Lja2g0467 765 SUPERFAMILY ARM repeat 436 706 IPR016024 -
Lja2g0467 765 MobiDBLite consensus disorder prediction 231 249 - -
Lja2g0467 765 MobiDBLite consensus disorder prediction 716 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0467 Lja-Chr2 4273154 4277883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0467 1 742 U-box Gene Family AT4G36550 37.778 8.31e-146 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0467 - - mtr:MTR_5g020570 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0467 2 4273154 4277883 Lja2g0467 2 4273154 4277883 ECH
Lja2g0467 2 4273154 4277883 Lja4g3219 4 60764490 60769824 ECH
Lja2g0467 2 4273154 4277883 Lja4g3219 4 60764490 60769824 PCT