Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0463 ATGGAAGCAGTGAGAGGACAAGGTAGTAAGGACATAGAAATTATGTCAACAGCAACAACAACCACTTTAGGTTACAATCTTCCCATCAGAAATTCTTCATCTTCTTCTTCCAAGCTTTCTTCTCCAACTGCAGGACACAGAACAAGTACTGATCAACCTGCTCCAGTACCAGTACCTCATACCAACAACAACACATTAATCTTCAATGATTCAGCTCAACCTTCACACCACCACCACCATCTTTCTGCACCACCACTACCTCAAACTCAAAACCACCACCATCAATCTCAGAGACCCACCACTACAGATCCAGATCTAACCCCATCATCTTCCCCTCTAGCCACAACAAGAATCACAGCACCACCACCACCACCACCAACACCGTTGGTCAGATACCGAGAATGTCTGAGAAACCACGCGGCGAGCATGGGGAGCCACGTGGTGGACGGTTGCGGCGAGTTCATGCCAAGTGGAGAAGAAGGCACCGAAGCACTCAAATGCGCCGCTTGCGAGTGCCACCGCAATTTCCACCGGAAAGAGGTTGAAGGTGAACAGCAAGTCCCCAATCCCAGTTTCCACTCCTATTACAAGCACAGCAACGGCCACCTTCAGCTTCCTGCACCACAACCGCTGCCACCGCCACAAAACTCTTCTCTTAGATTTTCCCACGCGGCGGCGGGTACTACTCCTACGGCGGGTCCGGTTCCAGTTCCGCCGTTGATGATGGCTTTCGGAGGCGCTGCCGCGGAGTCGTCGAGCGAAGATCTGAACATGTTCCAGCGTAACGCGGGAGCACAGGAGGCGGCGGCGCTATCGAGGAAGAGGCATAGGACGAAATTCTCGAGCCAGCAGAAGGATAGGATGATGGAGTTTGCTGAGAAGATTGGGTGGAGGATCCAGAAACAGGATGAGGAAGAGGTGCAGCAGTTTTGTTCTCAAGTGGGTGTGAGGAGAAAGGTTTTCAAGGTTTGGATGCATAATAACAAGCAAGCAATGAAGAAATTACACCAAATGTAA 1017 0.5084 MEAVRGQGSKDIEIMSTATTTTLGYNLPIRNSSSSSSKLSSPTAGHRTSTDQPAPVPVPHTNNNTLIFNDSAQPSHHHHHLSAPPLPQTQNHHHQSQRPTTTDPDLTPSSSPLATTRITAPPPPPPTPLVRYRECLRNHAASMGSHVVDGCGEFMPSGEEGTEALKCAACECHRNFHRKEVEGEQQVPNPSFHSYYKHSNGHLQLPAPQPLPPPQNSSLRFSHAAAGTTPTAGPVPVPPLMMAFGGAAAESSSEDLNMFQRNAGAQEAAALSRKRHRTKFSSQQKDRMMEFAEKIGWRIQKQDEEEVQQFCSQVGVRRKVFKVWMHNNKQAMKKLHQM* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0463 338 MobiDBLite consensus disorder prediction 84 116 - -
Lja2g0463 338 MobiDBLite consensus disorder prediction 21 130 - -
Lja2g0463 338 MobiDBLite consensus disorder prediction 21 72 - -
Lja2g0463 338 Pfam ZF-HD protein dimerisation region 130 181 IPR006456 -
Lja2g0463 338 Gene3D - 259 334 - -
Lja2g0463 338 MobiDBLite consensus disorder prediction 182 218 - -
Lja2g0463 338 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 75 334 - -
Lja2g0463 338 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 75 334 - -
Lja2g0463 338 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 132 180 IPR006456 -
Lja2g0463 338 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 131 181 IPR006456 -
Lja2g0463 338 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 273 330 IPR006455 -
Lja2g0463 338 SUPERFAMILY Homeodomain-like 263 334 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0463 Lja-Chr2 4239179 4240559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0463 78 334 ZF-HD Transcription Factor Family AT2G18350 44.891 2.20e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja2g0463 ZF-HD_dimer 3.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0463 - - lja:Lj2g3v1745000.1 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0463 2 4239179 4240559 Lja2g0463 2 4239179 4240559 ECH
Lja2g0463 2 4239179 4240559 Lja4g3221 4 60836638 60837912 ECH
Lja2g0463 2 4239179 4240559 Lja4g3221 4 60836638 60837912 PCT