Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0459 ATGCATCGTGCTTGCAGTGAACACGTGATGGGACACTGCACATGTGGGATGTTTCATGGCCAAACAAACTCCTTCTCAATGCTCTTCTCCATGCCCAACCACCAACCCTATGATGAATATTCCGACATGTATTCCTACACCCCTTCTTCCTCCTCCGTGGACTGCACGCTCTCCCTAGGTACTCCATCCACCCGTGTAACCACCGAAGACCATGAAGAGAAGCGAAACCACCGCCACGAACGCCGCTCTGTCTCTAACTTTTGCTGGGATTTACTCCAACCCAAACACAGCTCTCAATCCCAAACCAAGTCCACAAGAGGAGGCACCACCACTAATACAAACTCAAACAATGATTCTCTCCTCGCTCGCCGCTGCGCCAACTGCGACACCACCTCAACACCACTCTGGAGGAATGGCCCTCGAGGACCAAAGTCGCTGTGCAATGCCTGTGGGATAAGATTCAAGAAGGAAGAGAGAAGAGCAAGTGCTGCCGCCGCCACACCGGCGACAGCCACTGGCGGTGTAATGGAGTCGTCTCAAATGTACAACCACAACAACAGCTCATGGTACGGAAACTCACAGAGCCAGAAGATGCAGTGCTTCTCACCGGCGATGGGAAACGAGCTCCGGTTCATGGATGAGTCCGATAGGGACTCCGAGAATGGCATTCCCTTCCTCTCTTGGAGACTCAACGTGACGGACAGAACAAGCCTCGTTCATGACTTCACCAGATGA 735 0.5279 MHRACSEHVMGHCTCGMFHGQTNSFSMLFSMPNHQPYDEYSDMYSYTPSSSSVDCTLSLGTPSTRVTTEDHEEKRNHRHERRSVSNFCWDLLQPKHSSQSQTKSTRGGTTTNTNSNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATPATATGGVMESSQMYNHNNSSWYGNSQSQKMQCFSPAMGNELRFMDESDRDSENGIPFLSWRLNVTDRTSLVHDFTR* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0459 244 ProSiteProfiles GATA-type zinc finger domain profile. 119 155 IPR000679 GO:0006355|GO:0043565
Lja2g0459 244 MobiDBLite consensus disorder prediction 95 118 - -
Lja2g0459 244 Pfam GATA zinc finger 125 159 IPR000679 GO:0006355|GO:0043565
Lja2g0459 244 SMART GATA_3 119 173 IPR000679 GO:0006355|GO:0043565
Lja2g0459 244 CDD ZnF_GATA 124 156 IPR000679 GO:0006355|GO:0043565
Lja2g0459 244 ProSitePatterns GATA-type zinc finger domain. 125 150 IPR000679 GO:0006355|GO:0043565
Lja2g0459 244 PANTHER GATA TRANSCRIPTION FACTOR 18 5 243 - -
Lja2g0459 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 163 - -
Lja2g0459 244 Gene3D - 121 197 IPR013088 GO:0006355|GO:0008270
Lja2g0459 244 MobiDBLite consensus disorder prediction 60 79 - -
Lja2g0459 244 PANTHER GATA TRANSCRIPTION FACTOR 18 5 243 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0459 Lja-Chr2 4194758 4196311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0459 14 244 C2C2-Gata Transcription Factor Family AT3G50870 45.993 4.99e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja2g0459 GATA 5.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0459 - - gmx:100790571 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0459 2 4194758 4196311 Lja2g0459 2 4194758 4196311 ECH