Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0449 ATGGTGACGAAGGACAAAGTGAAAACCGAAGATCCTGCTGTTGAATCTCCCACTTCGGTCCTAGAAGATGAGGATGCCTGTGGCAAGGAAGGGGAAGTTAAGTTGGAAGAAGAGGTGATTGTGGATGTTAAAGATGATGGATCCTCCCTTTTGCCGGAATCAATTGCGGAGGAGGAAGAGAAGTTGCTCAAAGCTCGGATTCAGGAAGATGAAGTGAAGTGTGAGGAGGCACCGGACCTCAATGAGACACAGTTTGACAAATTGGATGAGCTTTTAACGCAAACCAAGCTGTACTCTGAGTTTCTTCTGGAGAAAATGGATGACATCACGCTTAATGGGGGCGATAAAGAGAATGACGCTGAGGCTGAGGAGGAGAGTAATCCAGCGGTGAAGAAGAAGGGTCGCGGAGGAAAACGAAAAGCAGCTTCACAATGCAATACAAGGAAGGCCAAAAGGGCAGTTGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGCAGACTGAAGATATGAACTTGACTGCGGAAGAAAGAGTTGAGAAAGAGCAGAAGGAGCTTATCCCTTTTCTCACAGGTGGAAAATTGAAGTCTTACCAACTAAAGGGTGTAAAGTGGTTGATCTCCCTTTGGCAAAATGGTTTGAATGGAATTCTTGCGGATCAAATGGGTCTTGGGAAGACAATTCAGACAATTGGGTTTCTTGCACATCTGAAAGGCAATGGTCTGGATGGGCCATATATGATAATTGCTCCTCTATCAACACTCTCAAATTGGGTGAATGAGATTTCTAGGTTTGCACCATCGCTCCCAGCTGTTATCTACCATGGTGACAAGAAACAGAGAGATGAAATCCGAAGGAAACATATGCCTAGAACAATTGGCCCAGAATTTCCCATAGTAATTACTTCTTATGAGGTTGCTTTAAATGATGCCAAGAAACATCTCAGAGCATACCATTGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAATTCAAAATGCTTATTAGTGAAGGCGTTGAAATGCATGACTGTAGAAAATAAGCTTCTTCTTACTGGGACACCTCTTCAGAATAACTTGGCAGAGCTATGGTCGTTGTTGAACTTCATTTTACCTGATATCTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGCAAGTGCAGTAATGGAGCAACCAAGGAAGAACTGGAAGAGAAAAGAAGAGCCCAAGTAGTAGCAAAGCTTCATGCAATTCTTCGGCCCTTTCTCTTGCGTAGGATGAAGGCTGATGTTGAGCTGATGTTGCCACGGAAAAAGGAGATAATTATCTATGCAAGCATGACTGAAAATCAGAAAAGCTTGCAGGATCATTTAATTAACAAGACATTGGGGAAATATTTAGAAGACAAAATGTCAATTGGACGTGTTGGGGCAAAGCTTAATAATTTGGTCATTCAACTTAGAAAGGTCTGCAACCATCCAGACCTCGTAGATTCAGCCTTTGATGGCTCACATTTTTATCCTCCTGTAAATGAGATAGTTGAACAATGTGGAAAATTCCATTTGCTTGACCGATTGTTGCAGCGGCTGTTTGCTCGCAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAAGGTGTTAGATATAATGGACTATTATTTCAGTGAAAAGGGCTTTGAAGTTTGCAGGATTGATGGGAGTGTCAAACTAGAGGAAAGGAAACGACAGATCCAGGAGTTCAATGATGTAAACAGCAATTGCAGAATCTTTCTTCTTTCAACTAGGGCTGGTGGATTGGGAATTAATCTCACTGCGGCTGACACTTGCATTCTTTATGACAGCGATTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGCCATAGAATAGGTCAAACAAAGCCTGTTCATGTTTACAGGCTTGCAACTGCTCAATCTGTAGAGGGTCGCATGTTAAAAAGAGCTTTTAGCAAGTTGAAGCTTGAGCATGTGGTTATTGAGAAAGGACAGTTTCATCAAGAACGTTCAAAGCCTGTCAATGTGAATGAAATGGAGGAGGATGATGTTTTGGCATTGCTTCGAAATGAAGAAACAGCGGAAGATAAAATGATACAAACCGATATTAGTGATGAAGACTTGGAGAAGCTCTTGGACCGCAGTGATCTTGTTATCAATAGCTCAAATGATGATGAAAACTTCAAAGCACCAGGAATCTCATTTCCCTTGAAAGGGCCTGGGTGGGAGGTGGTGATTCCAACTGCGAGTGGGGGCATGCTTTCTACCCTTAACAGTTGA 2292 0.4232 MVTKDKVKTEDPAVESPTSVLEDEDACGKEGEVKLEEEVIVDVKDDGSSLLPESIAEEEEKLLKARIQEDEVKCEEAPDLNETQFDKLDELLTQTKLYSEFLLEKMDDITLNGGDKENDAEAEEESNPAVKKKGRGGKRKAASQCNTRKAKRAVAAMLTRSKESEQTEDMNLTAEERVEKEQKELIPFLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGNGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAVIYHGDKKQRDEIRRKHMPRTIGPEFPIVITSYEVALNDAKKHLRAYHWKYLVVDEGHRLKNSKCLLVKALKCMTVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEKRRAQVVAKLHAILRPFLLRRMKADVELMLPRKKEIIIYASMTENQKSLQDHLINKTLGKYLEDKMSIGRVGAKLNNLVIQLRKVCNHPDLVDSAFDGSHFYPPVNEIVEQCGKFHLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLEERKRQIQEFNDVNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERSKPVNVNEMEEDDVLALLRNEETAEDKMIQTDISDEDLEKLLDRSDLVINSSNDDENFKAPGISFPLKGPGWEVVIPTASGGMLSTLNS* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0449 763 PANTHER SNF2/RAD54 HELICASE FAMILY 14 762 - -
Lja2g0449 763 MobiDBLite consensus disorder prediction 113 132 - -
Lja2g0449 763 Gene3D - 195 425 IPR038718 -
Lja2g0449 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 424 IPR027417 -
Lja2g0449 763 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 374 IPR014001 -
Lja2g0449 763 MobiDBLite consensus disorder prediction 113 145 - -
Lja2g0449 763 Pfam SNF2-related domain 197 495 IPR000330 GO:0005524|GO:0140658
Lja2g0449 763 SMART ultradead3 190 385 IPR014001 -
Lja2g0449 763 Coils Coil 55 75 - -
Lja2g0449 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 716 IPR027417 -
Lja2g0449 763 SMART helicmild6 546 630 IPR001650 -
Lja2g0449 763 Coils Coil 164 184 - -
Lja2g0449 763 MobiDBLite consensus disorder prediction 1 31 - -
Lja2g0449 763 Pfam Helicase conserved C-terminal domain 520 630 IPR001650 -
Lja2g0449 763 CDD SF2_C_SNF 506 640 - -
Lja2g0449 763 Gene3D - 430 732 IPR027417 -
Lja2g0449 763 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 14 762 - -
Lja2g0449 763 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 684 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0449 Lja-Chr2 4097138 4103020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0449 161 651 RAD5 or RAD16-like Gene Family AT3G16600 24.547 2.20e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja2g0449 SNF2_N 7.9e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0449 K19001 - gmx:100777687 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0449 2 4097138 4103020 Lja2g0449 2 4097138 4103020 ECH