Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0447 ATGTCTTCTCCTCATAACTCTTCTCCCGATAACTCCACACCGGATAACTCAACACCCGATAACAGTACACCTGATGATGCCGATGGCTCTTCTTCGCCGCCATCGCCTCCATCACAATCCCCACCTCAACAATCCCCACCTCAACAATCACAATCACCCTCACCACCACCGCCATCAGAGAACTCAACACCACCCCCTTCTCCTCCTCCACCGAGTTCAGGAAACAACCCAACCCCTCCATCATCCAATGGGTCCCCACCTCCTCCTCCAGTATCAGGCCATTCTGACTCTGGTTCACCCTCGCCTCCACACAAATCATTGCCAACTCCCCCTTCCTCGGGAAACTCCAGTGACAACAATGACATTAGCAATAAGGCATTAGTTGGAGCAGTGCTTGGGGTAGGGGCCGTTCTTCTCATTATGGTAGTTGTTTGCGTTATTTGCTCAAGGAAGAAGAAAAAAACCAAGCAAATGTACTATTATGGAGAGCATCCATCTATGGGAAAAGGGAGTAACTATTACAACAGTGGGCCACACCCTTACAACAGTGGGCAGCATCCTTACAACAGTGGGCAGCACCCTAATTACTATGGAGGTCCTCATGGGGATCATGTTGTGAGGGTACAAAATGGAATGGGTCCACCAAACGGTGGTGGATGGGGAGCTCCGCCACCTCCTCCAATGATGAACAGTACCGACATGAGCTCGAATTACTCAGGAGGACCACCCGCTCTGCCTCCTCCCTCGCCAAGCCTTGCATTAGGCCTCAAAGGGGGCACCTTCAGTTATGAGGAATTGGCAGCCGCCACCAATAATTTCAATGATGCCAATTTGATAGGACAAGGTGGCTTCGGTTATGTCCATAAGGGTGTGTTGCCTAATGGTAAGGAAGTGGCAGTTAAGAGCTTGAAATCAGGAAGTGGGCAAGGAGAGCGCGAGTTCCAAGCTGAGATTGATATCATTAGCCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGGTACTGCATTTCTGGTGGGCAGAGAATGTTGGTCTATGAGTTTATCTCCAATAACACTTTGGAATTCCACCTTCATGGAAAAGGTAACCCTACCATGGATTGGCCTAGTAGAATGCGGATTGCAATAGGATCTGCTAAAGGGCTTGCCTATCTTCATGAGGACTGTCATCCTCGCATAATCCATCGTGATATCAAAGCTGCGAATGTCCTTATCGATGACAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAACAATACTCATGTATCAACTCGTGTCATGGGAACTTTCGGGTACCTTGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATTACTGGGAGGCGACCTGTGGATGCCTCAAGTGCCATGGACGACAGTTTAGTGGACTGGGCTCGTCCACTATTGAATCGTGGATTGGAGGAAGATGGCGACTTTGGAGAGTTGGTGGATCCATTTTTGGAGGGAAACTATAATCCTCAAGAACTGAAAAGGATGGCAGCTTGCGCTGCTTCTAGCATCCGCCATTCGGCCAAGAAGCGTTCTAAAATGAGCCAGATTGTAAGAACATTGGAAGGAGATGTCTCACTAGACGACTTGAAGGAGGGGATTAGGCCCAGCGCTGTTCCCGCGGCTTCTGTGAGCTCAGAGTATGACACAATGCAATACAATGCCGATATGCAAAAGTTCAGAAAGGCAGTGTTCAGCAACAGCACGGAATTCGGCACTAGCAGCTGCTCCAGTGGTGAGCAGAAATAG 1824 0.4857 MSSPHNSSPDNSTPDNSTPDNSTPDDADGSSSPPSPPSQSPPQQSPPQQSQSPSPPPPSENSTPPPSPPPPSSGNNPTPPSSNGSPPPPPVSGHSDSGSPSPPHKSLPTPPSSGNSSDNNDISNKALVGAVLGVGAVLLIMVVVCVICSRKKKKTKQMYYYGEHPSMGKGSNYYNSGPHPYNSGQHPYNSGQHPNYYGGPHGDHVVRVQNGMGPPNGGGWGAPPPPPMMNSTDMSSNYSGGPPALPPPSPSLALGLKGGTFSYEELAAATNNFNDANLIGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFISNNTLEFHLHGKGNPTMDWPSRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDASSAMDDSLVDWARPLLNRGLEEDGDFGELVDPFLEGNYNPQELKRMAACAASSIRHSAKKRSKMSQIVRTLEGDVSLDDLKEGIRPSAVPAASVSSEYDTMQYNADMQKFRKAVFSNSTEFGTSSCSSGEQK* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0447 607 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Lja2g0447 607 MobiDBLite consensus disorder prediction 1 120 - -
Lja2g0447 607 SMART serkin_6 273 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0447 607 PANTHER RECEPTOR-LIKE KINASE 48 600 - -
Lja2g0447 607 Gene3D Transferase(Phosphotransferase) domain 1 349 557 - -
Lja2g0447 607 SUPERFAMILY Protein kinase-like (PK-like) 255 546 IPR011009 -
Lja2g0447 607 MobiDBLite consensus disorder prediction 30 96 - -
Lja2g0447 607 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 48 600 - -
Lja2g0447 607 Pfam Protein tyrosine and serine/threonine kinase 277 477 IPR001245 GO:0004672|GO:0006468
Lja2g0447 607 PRINTS Proline rich extensin signature 58 74 - -
Lja2g0447 607 PRINTS Proline rich extensin signature 76 93 - -
Lja2g0447 607 PRINTS Proline rich extensin signature 37 58 - -
Lja2g0447 607 PRINTS Proline rich extensin signature 12 24 - -
Lja2g0447 607 ProSiteProfiles Protein kinase domain profile. 273 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0447 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 393 405 IPR008271 GO:0004672|GO:0006468
Lja2g0447 607 Gene3D Phosphorylase Kinase; domain 1 253 348 - -
Lja2g0447 607 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0447 Lja-Chr2 4079895 4083366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0447 26 590 Trihelix Transcription Factor Family AT1G70460 46.734 6.37e-146 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lja2g0447 PK_Tyr_Ser-Thr 6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0447 - - gmx:100777163 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0447 2 4079895 4083366 Lja4g3231 4 60964242 60967259 ECH
Lja2g0447 2 4079895 4083366 Lja2g0447 2 4079895 4083366 ECH
Lja3g0517 3 5191724 5195126 Lja2g0447 2 4079895 4083366 ECH
Lja2g0447 2 4079895 4083366 Lja4g3231 4 60964242 60967259 PCT