LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g0439	ATGTCCATGAAAAATGAAACAAATGTGGTGCACATGGAACTGGAAGATGGTGTGAACGAGAAGAGTCGTAGAAAGCTCAACACGTATGCTTGTGCTTGCGTGATGGCCGTCACTATTATATCTGCCATATTCGGTTATGTTACTGGAGTAATGGCTGGAGCACTCTTGTTCATCAAGGAAGAGCTTGGAATCAATGACATGCAAGTCCAGCTCCTAGGAGGTATTTTAAACGTGTGCGCATTACCGGCATGCATGGTTGCCGGAAGAACATCCGACTACGTCGGCCGCCGCTACACCATCATTCTATCCGCCGTAATCCTCTTATTGGGCTCCATTCTTATGGGCTACGGCCCATCTTTCCCAATCTTAATGATAGGAAGATGCACTGCAGGCTTTGGTGTGGGCTTTGCACTGATCATAGCCCCAGTATACAGCACAGAGATTTCACTTCCTTCAAATAGAGGCTTCCTCACTTCCCTCCCTGATGTTTCACTCAATGTGGGACTCTTAATTGGCTATGTCTCAAACTACTTCCTTGGGAAGTTACCCTTGAAACTTGGATGGAGATTGATGCTAGCAATTCCAGTGATTCCTTCACTTGTGCTGATCATTCTCATGTTAAAATTGGCAGAGTCTCCGAGATGGTTGGTAATGCAGGGACGCGTAGGCGAGGCGAGAAAAGTGCTTTTACTTGTCTCTAACTCAAAGGAAGAAGCAGAACAACGGTTGAAGGAAATAAAAAGTGCTGTGGGGATTGATGAGAGCTGCACCAAAGACATTGTCCATGTTCCCGAGAAAACTCGCAACGGCGAGGGAGCTTTGAGGGAATTGTTTGTTAAGCCTTCGCCTCCGGTGCGCCGGATACTAATTGCTGCAATTGGAGTTCATGTGTTCCAGCAAATTTGTGGGATTGAGGGGATTTGTATATACAGTCCAAGGGTGTTTGAGAAAACAGGAATAACAAGCAAGAGTAATCTCCTTCTAGCCACAGTTGGTTTAGGAATCAGCCAAGCTGTGTTCACATTCATTTCAGCTTTTTTGTTGGACAGAGTTGGGAGGAGGATTTTGTTGCTGATTAGTTCAGGGGGTGTGGTTGTGACATTGTTGGGTTTGAGTTTTTGTTCATTTATAATGCAGCAATCCAAAGAAGAACCCTTGTGGGGGATAAGTTTTACCATTGTTGCTATCTACATCTTTGTGGCTTTTGTGGCTATTGGGATTGGGCCTGTGACATGGGTTTACAGCTCTGAGATATTTCCACTGAGGTTGAGAGCACAGGGTCTTGGTGTGTGTGTGCTTGTGAACAGGCTTGCAAATGTGGCAGTGCTTACCAGTTTCATTTCAATTTACAAGACAATAACAGTGGGTGGGAGTTTCTTACTGTATACTGTTATCACTGCTTGTGCTTGGTGGTTCTACTATTCCTACTTGCCTGAGACTAAAGGAAGATCATTAGAAGATATGGAGTCTATTTTTGGGAAAAATTCCAAGCCAGAGAAACAAATTAATGCAGCCCAAGTTAACAATGGATAG	1533	0.4442	MSMKNETNVVHMELEDGVNEKSRRKLNTYACACVMAVTIISAIFGYVTGVMAGALLFIKEELGINDMQVQLLGGILNVCALPACMVAGRTSDYVGRRYTIILSAVILLLGSILMGYGPSFPILMIGRCTAGFGVGFALIIAPVYSTEISLPSNRGFLTSLPDVSLNVGLLIGYVSNYFLGKLPLKLGWRLMLAIPVIPSLVLIILMLKLAESPRWLVMQGRVGEARKVLLLVSNSKEEAEQRLKEIKSAVGIDESCTKDIVHVPEKTRNGEGALRELFVKPSPPVRRILIAAIGVHVFQQICGIEGICIYSPRVFEKTGITSKSNLLLATVGLGISQAVFTFISAFLLDRVGRRILLLISSGGVVVTLLGLSFCSFIMQQSKEEPLWGISFTIVAIYIFVAFVAIGIGPVTWVYSSEIFPLRLRAQGLGVCVLVNRLANVAVLTSFISIYKTITVGGSFLLYTVITACAWWFYYSYLPETKGRSLEDMESIFGKNSKPEKQINAAQVNNG*	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g0439	510	ProSitePatterns	Sugar transport proteins signature 1.	344	361	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lja2g0439	510	TIGRFAM	SP: MFS transporter, sugar porter (SP) family	15	487	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja2g0439	510	ProSitePatterns	Sugar transport proteins signature 1.	87	104	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lja2g0439	510	PRINTS	Sugar transporter signature	41	51	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja2g0439	510	PRINTS	Sugar transporter signature	124	143	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja2g0439	510	PRINTS	Sugar transporter signature	299	309	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja2g0439	510	PRINTS	Sugar transporter signature	393	414	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja2g0439	510	PRINTS	Sugar transporter signature	416	428	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lja2g0439	510	PANTHER	SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER	20	497	IPR045262	GO:0015144
	Lja2g0439	510	Pfam	Sugar (and other) transporter	35	492	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Lja2g0439	510	Coils	Coil	229	249	-	-
	Lja2g0439	510	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	33	481	IPR020846	GO:0022857
	Lja2g0439	510	SUPERFAMILY	MFS general substrate transporter	19	489	IPR036259	-
	Lja2g0439	510	PANTHER	POLYOL/MONOSACCHARIDE TRANSPORTER 1	20	497	-	-
	Lja2g0439	510	Gene3D	MFS general substrate transporter like domains	22	496	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g0439	Lja-Chr2	4035309	4037911	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g0439	14	505	Organic Solute Cotransporters	AT4G36670	50.813	0.0	545

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g0439	-		-	gmx:100786322	751.895

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g0439	2	4035309	4037911	Lja2g0439	2	4035309	4037911	ECH
	Lja3g0528	3	5283921	5287086	Lja2g0439	2	4035309	4037911	ECH
	Lja2g0439	2	4035309	4037911	Lja4g3234	4	60993971	60995993	PCT