Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0433 ATGCCTGTTGATTTGGATAACGTTTCCACTGCTTCAGGGGAAGCTAGTGTCTCTTCCTCTGGCAATCAGATAGTACCACCACCAAAAGCAGCCACCACCACCACCGCCAAGAAGAAGCGAAACCTCCCCGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCACCGAAGACCCTGATGGCGACGAACAGATTTGTATGTGAAATATGCAACAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTCCATCGACGGGGGCACAATCTGCCATGGAAGCTGAGGCAGAGGTCAAGCAAGGAGGTGAGGAAGAGGGTGTATGTTTGTCCTGAACCGACGTGTGTTCATCACGATCCTTCTAGAGCTTTGGGTGATCTCACGGGGATTAAGAAGCATTTCTGCAGAAAACATGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAATATGCGGTTCAATCGGATTGGAAAGCTCACTCCAAGATTTGCGGTACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCAAGGAGGGATAGCTTCATCACGCATAGGGCGTTTTGTGATGCGTTAGCAGAGGAAAGTGCAAGATCTCATCCTCAATCTGCTGCAAAGGGTAGTCCAGAATCAGAATCCAAAGCTGCAACCGGCGATTCAGCACCTTCTGTGCCGGCGGCGCCACTGCTGCCGCCGCCGCCGCCAGTTGCTTCTCAGTCAAACAGTGTTGTCTTATCTACTCTGCAGACTCAGAATACAGAATTGCCAGAAAATTCCCCACAAATTATAGAGGAACCACCAGCCAATACGGCTATTAATGGGAGCTGCAGCACCAGCACTAGCACCAGCTCAACTAGCAATAACAACAGCAATGGTGGTGCTAGCAGCAGTGTATTTGCGAGCTTGTTTGCTTCATCAACCCCATCACAAAACCTTCAATCTCAAACTCCAGCATTCAGTGACCTAATTAGAGCCATGGGGCCTCCAGCAGACCTCTCAGGGCCTTCATCTGCCGAGTCTATCTCCCTGTGCCTTGGATCATCCATTTTTGCAACCGGAGGGCAGGAGCGGCGTCAATATGCCCCTCCACCGCAGCCGGCCATGTCCGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCCGCAACAAATGCCTCTTTGCTTCGTGGCTTAGGCATAGTGTCATCTTCAGCTTCATCCTCACCGGGTCAACAAGATAGTTTGCAATGGGGTCAAAGGCCGGTCGAACCGGAGAATTCCACCGTTCCTTCCGGGCTCGGGCTCAGTCTTCCTTACGATGGCGACTCTGGACTGAAGGAGTTGATGATGGGCACTCCCTCCATGTTTGTTCCAAAGCAGACCACCCTCGATTTTCTCGGGTTGGGGATGGCTGTTGGGGGCACCCCTGGTGGAGGCTTATCAGCACTGATGACTTCTATTGGTGGCGGTCTAGATGTTACGTCTGCAGCAGCATCCTTTGGTAATGGAGAATTCTCTGGCAAAGATATTGGGGGCAACACTTGA 1533 0.5114 MPVDLDNVSTASGEASVSSSGNQIVPPPKAATTTTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSHPQSAAKGSPESESKAATGDSAPSVPAAPLLPPPPPVASQSNSVVLSTLQTQNTELPENSPQIIEEPPANTAINGSCSTSTSTSSTSNNNSNGGASSSVFASLFASSTPSQNLQSQTPAFSDLIRAMGPPADLSGPSSAESISLCLGSSIFATGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASSSPGQQDSLQWGQRPVEPENSTVPSGLGLSLPYDGDSGLKELMMGTPSMFVPKQTTLDFLGLGMAVGGTPGGGLSALMTSIGGGLDVTSAAASFGNGEFSGKDIGGNT* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0433 510 MobiDBLite consensus disorder prediction 197 294 - -
Lja2g0433 510 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 509 - -
Lja2g0433 510 MobiDBLite consensus disorder prediction 1 48 - -
Lja2g0433 510 MobiDBLite consensus disorder prediction 399 431 - -
Lja2g0433 510 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Lja2g0433 510 MobiDBLite consensus disorder prediction 240 294 - -
Lja2g0433 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Lja2g0433 510 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lja2g0433 510 MobiDBLite consensus disorder prediction 399 429 - -
Lja2g0433 510 MobiDBLite consensus disorder prediction 9 39 - -
Lja2g0433 510 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 509 - -
Lja2g0433 510 Gene3D Classic Zinc Finger 46 112 - -
Lja2g0433 510 Gene3D Classic Zinc Finger 120 200 - -
Lja2g0433 510 SMART c2h2final6 142 162 IPR013087 -
Lja2g0433 510 SMART c2h2final6 107 137 IPR013087 -
Lja2g0433 510 SMART c2h2final6 66 88 IPR013087 -
Lja2g0433 510 MobiDBLite consensus disorder prediction 202 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0433 Lja-Chr2 3954238 3957623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0433 1 507 IDZ Gene Family AT5G66730 58.550 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g0433 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0433 K25869 - gmx:100806404 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0433 2 3954238 3957623 Lja2g0433 2 3954238 3957623 ECH
Lja2g0433 2 3954238 3957623 Lja4g3237 4 61043439 61046373 ECH
Lja2g0433 2 3954238 3957623 Lja4g3237 4 61043439 61046373 PCT