Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0430 ATGAGAGTTCCCGTTTCATCACCCCCACACGCCATCCCAAAACCCACCACCACCACAATCACAGGCCCCTACAATTACGAGCCCACTTCAGTCCTCGACCTCTGCCGGAGCCCAAGCCCAGGCAGCGTCCCTCAAAAGCCCACCCAAGACTGTCCGGAGCTCGACGACCATGCTCTACATAATCTCGACTGGGACTCCATCATGAACGACCTCGGCTTCCACGACGACACCACCACCGCCACCACCGCACACATTTTCCCCCCTGTCACCGACTTCACACCCTTCGATCAAGCCGCAGAACTCACCGTCACCGGCGACATGTACGGTTACAACTTCAACTACCCCACCCTCGACAACCACCACAGCAACAACAACAACACCAACGTCTTAGATTCCATCATCGAAGATCTCATCCGCGCCGCTGATTGCTTCGACACCAACCAACTCCAACCGGCGCAGATGATATTAGAGCGGCTCAATCACCGCCTACGATCTCCCACCGGAAAGCCACTCCAGCGAGCGGCGTTTCACTTCAAAGACGCGCTCCAGTCTCTCCTCTCCGGTTCGAATCCGCCACGGGTTTCTTCCATGGTGGAAATCGTGCACGGAATGAGAACCTTCAAGGCGTTCTCCGGAATCTCACCGATCCCGATGTTCTCCATCTTCACCACCAATCAAGCCCTCCTCGAATCGCTGATTCACTCCTCCTCCTGCTTCCTTCACATCATCGACTTCGAAATTGGACTCGGGATTCAATACGCTTCTCTCATGAAGGAGATTGCAGAGAAGGTTGAGACCGGTAAAATTGGTTCACCGGTTCTACGAATAACCGCCGTCGTTCCTGAAGAGTACGCCGTCGAGAGCACTCTGGTTCGTGAGAATCTTGTTCAGTTCGCTCAAGAGCTCAGGATCCGTGTCCAGGTTGAGTTCGTATCGCTGCGGACGTTCGAGACGGTGTCCTTCAAGGCGGTGAAGTTCGTCGACGGGGAGAGGACCGCCGTGCTTCTGTCTCCGGCGATATTTCGTCGGCTCGGGTCTGCAGCTGCTTTTATGGCGGACGTGCGGAGCGTCTCGCCGTGCGTGGTGGTTTTTGTGGACGAGGAGGGGTGGGCGGAGGCGGCGGCTGAGGCGAGTTTCCGGCGCGGCGTGGTGAGCAGTCTGGAGTTTTACTCGATGATGCTGGAGTCGTTGGATGCGTCGGTGGTTAGTGGAGGAGGCGGTGAATGGGTGAAGAGGATTGAGATGCTGCTTCTGCGACCGAAGATGATGGCGGCGGTGGATAGCGCGGGAAGGCGGATGCCGCCGTGGAGGGAGGCGTTTTACTGTGCTGGGATGAGGCCGGTTCAGTTAAGCCAGTTCGCGGATTTTCAAGCGGAGTGTTTGTTGGCCAAGTCACAAATAAGGGGATTCCACGTGGCTAAACGCCAGGCTGAGCTGGTGCTTTTCTGGCATGAGCGGGCCATGGTTGCCACGTCAGCTTGGCGTTGTTAA 1491 0.5674 MRVPVSSPPHAIPKPTTTTITGPYNYEPTSVLDLCRSPSPGSVPQKPTQDCPELDDHALHNLDWDSIMNDLGFHDDTTTATTAHIFPPVTDFTPFDQAAELTVTGDMYGYNFNYPTLDNHHSNNNNTNVLDSIIEDLIRAADCFDTNQLQPAQMILERLNHRLRSPTGKPLQRAAFHFKDALQSLLSGSNPPRVSSMVEIVHGMRTFKAFSGISPIPMFSIFTTNQALLESLIHSSSCFLHIIDFEIGLGIQYASLMKEIAEKVETGKIGSPVLRITAVVPEEYAVESTLVRENLVQFAQELRIRVQVEFVSLRTFETVSFKAVKFVDGERTAVLLSPAIFRRLGSAAAFMADVRSVSPCVVVFVDEEGWAEAAAEASFRRGVVSSLEFYSMMLESLDASVVSGGGGEWVKRIEMLLLRPKMMAAVDSAGRRMPPWREAFYCAGMRPVQLSQFADFQAECLLAKSQIRGFHVAKRQAELVLFWHERAMVATSAWRC* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0430 496 MobiDBLite consensus disorder prediction 1 25 - -
Lja2g0430 496 PANTHER SCARECROW-LIKE PROTEIN 15 19 495 - -
Lja2g0430 496 Pfam GRAS domain family 134 495 IPR005202 -
Lja2g0430 496 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 495 IPR005202 -
Lja2g0430 496 ProSiteProfiles GRAS family profile. 124 495 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0430 Lja-Chr2 3938170 3940278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0430 54 495 GRAS Transcription Factor Family AT4G36710 54.123 3.56e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja2g0430 GRAS 2.1e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0430 - - gmx:100784206 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0430 2 3938170 3940278 Lja2g0430 2 3938170 3940278 ECH
Lja2g0430 2 3938170 3940278 Lja4g3241 4 61102886 61104954 PCT