Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0428 ATGGGAATTGGAGAAGAAAGCATGGATAAACCTTCCAAACCATCTTCAACTTCTTCGACTCAGATATCTCCGACGCCTTCATATCCAGACTGGTCCAGCTCCATGCAGGCTTATTATGCTCCTGGAGTCACTCCACCTCCTTTTTATGCCTCAACTGTTGCTTCCCCAGCTATCCATCCCTATATATGGGGAGGCCAGCATCCCCTGATTCCACCATATGGTACTCCTGTTCCTTATCCAGCTATGTATCCTCCTGGGGCTGTCTATGCTCATCCTAGCATGACAACGACTCTAAGCACTCCACAGAATGTTATGGAAGGCAAGAGACCTGATAGAAAAGATCAGGCTTCTGCGAAAAGTTCAAAGAAAATGTCTGCGAATACTGGTTCCAAAGCAAGAGACAATGGAAAAGCAAGCTCAGGGTCAGGAAATGATGGCATCTCACAAAGTGCTGAAAGTGGTTCGGAGGGATCATCAGATGCTAGTGATGAGCAAACTAACCAACAGGAATCGGCTACAAACAAGAAAGGTAGCTTCAACCAAATGCTTGTTGAAGGAGCCAGCGCACAGAACAATTCTGTCTCTGTTGGGGTCATTTCTCAATCAGCTGTACCAGGAAAGCCTGTTGCATCAATGTCTGCAACTAATCTTAATACTGGAGTGGAGTTTTGGAATGCATCGGTAGATGCTACTCCTCCAACCATAATGGGACCTGATGCCACACTTGGTGAACCATGGAGACAAGACGAGCGTGAGGTGAAAAGACAGAAGAGGAAACTGTCTAATAGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAATTACAAAAGAGGGTAGAGTCGCTGGGGAATGAGAATCAAACTTTGAGAGAAGAGCTTCAGAGAGTATCTGAAGAGTGCATGAAGCTTACATCTGAAAATAACTCTATCAAGGAAGAGTTGAATCTGTTGTGTGGACCTGAAGCAGTTGCTAACCTTGAATAA 999 0.4545 MGIGEESMDKPSKPSSTSSTQISPTPSYPDWSSSMQAYYAPGVTPPPFYASTVASPAIHPYIWGGQHPLIPPYGTPVPYPAMYPPGAVYAHPSMTTTLSTPQNVMEGKRPDRKDQASAKSSKKMSANTGSKARDNGKASSGSGNDGISQSAESGSEGSSDASDEQTNQQESATNKKGSFNQMLVEGASAQNNSVSVGVISQSAVPGKPVASMSATNLNTGVEFWNASVDATPPTIMGPDATLGEPWRQDEREVKRQKRKLSNRESARRSRLRKQAECEELQKRVESLGNENQTLREELQRVSEECMKLTSENNSIKEELNLLCGPEAVANLE* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0428 332 Coils Coil 263 318 - -
Lja2g0428 332 Pfam bZIP transcription factor 250 312 IPR004827 GO:0003700|GO:0006355
Lja2g0428 332 Gene3D - 253 309 - -
Lja2g0428 332 PANTHER G-BOX-BINDING FACTOR 1 1 332 - -
Lja2g0428 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 257 272 IPR004827 GO:0003700|GO:0006355
Lja2g0428 332 MobiDBLite consensus disorder prediction 244 259 - -
Lja2g0428 332 Pfam G-box binding protein MFMR 5 94 IPR012900 -
Lja2g0428 332 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 332 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lja2g0428 332 SMART brlzneu 250 314 IPR004827 GO:0003700|GO:0006355
Lja2g0428 332 SUPERFAMILY Leucine zipper domain 253 309 IPR046347 GO:0003700|GO:0006355
Lja2g0428 332 MobiDBLite consensus disorder prediction 97 184 - -
Lja2g0428 332 MobiDBLite consensus disorder prediction 120 184 - -
Lja2g0428 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 252 315 IPR004827 GO:0003700|GO:0006355
Lja2g0428 332 MobiDBLite consensus disorder prediction 10 29 - -
Lja2g0428 332 CDD bZIP_plant_GBF1 255 306 IPR045314 GO:0003700|GO:0006355
Lja2g0428 332 MobiDBLite consensus disorder prediction 236 274 - -
Lja2g0428 332 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0428 Lja-Chr2 3928419 3932417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0428 1 332 bZIP Transcription Factor Family AT4G36730 56.456 5.07e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja2g0428 MFMR 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0428 K09060 - gmx:547788 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0428 2 3928419 3932417 Lja2g0428 2 3928419 3932417 ECH
Lja2g0428 2 3928419 3932417 Lja4g3242 4 61107879 61111211 ECH