Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0427 ATGGCACCTGAAAATACCCAGCTCCCAGCCACTATGCTAATGGCCCGCCTCTTCCATCTGTCAAATACTTTGCCAAACGATGGTGATGATCGGAGAGATGATGGTTTTAATTTTGAAATTGCTCCTAGCTTGCAAGTTGACCATGATAAGCTAACCATCGGAGAAGTGATAGGAGCAGGCAATGACTCTATTGTACACAAAGGATTGTATGAGGACTGCCCTGTTGCCGTAAAGATCATGCTTCCAGAAAAGACAGAGAATGCTTCACCTGAACGTAAGAAAAGATTTCAGAAGGAAGTTTACTTGATGTCTAAGATTCAACATAAAAATATTGTCAAGTTTATTGGTGCCTCTGTTGAACCATCAATGATGATGATAACAGAGCTTGTGGAAGGTGGTTCCCTGCAGAAAAACTTGAGGAGCATGTACCCAACGACTATGGATTTGGAACAATCTTTAGGTTTTGCTCTCGACATTTCTCAAGCCATGGAGTATCTGCATGAAAATGGCATCATTCACCGTGATCTCAAGCCTGGAAATTTGCTGCTTACAGGAGACAAGATGCATCTTAAACTTGCTGATTTTGGGATAGCTAGAGATGATGCATGTGATGAGATGACTTCTGAGGCTGGTACTTACCGATATATGGCTCCTGAGTTATTGAGCAAAGATCCACTTCCAAAAGGAGCAAAGATACGGTATGATCAAAAGGTAGATGTGTACAGCTTCGCCATTGTTCTGTGGTCCTTGATCACAAACCAAATTCCATTTAAGGGGTTGCATAACATGGCTGCAGCATTTGCCACAGTAAATAATGTGAGGCCAAGTGTGGAGGAGTTACCACAATATGTAGTTCCCCTGTTGCAGTCTTGTTGGGCAGAGGATCCAAAACTCCGACCAAAATTCAAGGAGATAACTCAAAAGCTTTGGGAGCTTCGGGATGAGTGTGTGCTGTTAAAAAGAGAGACTAGACTTGCCCGCTTAGCTGAGATTGAAATGGAAGTTGATAAATATAATGAAAGCAACAATGTTGGTGCTGGTGATAAGGAAGAAGACAGTGACAGCTCAAGTTCAGAGGAAGAGGAAGAGCACCAGAGTGTAGGCTCTTGGGTGGAACACATTTCCAAACATGATGGTGATCATGGCACTGTGACTGTGAAACCCGCCACTGAGGGCGGGCTCCAGGCTCAGAGCACCCCCTCCCCTGATTCTGACTCTGATTCTGATTCAGGGGATGGCAAGCCCAAAAAGAAAAGCAGGCTCAAGAGGTTCTTTAACTGTTTCCTCAGTTGCTTTACCATGCCTGCTGCAAGCAAGAAGAAGCATGGTGGTGATGACTGA 1341 0.4422 MAPENTQLPATMLMARLFHLSNTLPNDGDDRRDDGFNFEIAPSLQVDHDKLTIGEVIGAGNDSIVHKGLYEDCPVAVKIMLPEKTENASPERKKRFQKEVYLMSKIQHKNIVKFIGASVEPSMMMITELVEGGSLQKNLRSMYPTTMDLEQSLGFALDISQAMEYLHENGIIHRDLKPGNLLLTGDKMHLKLADFGIARDDACDEMTSEAGTYRYMAPELLSKDPLPKGAKIRYDQKVDVYSFAIVLWSLITNQIPFKGLHNMAAAFATVNNVRPSVEELPQYVVPLLQSCWAEDPKLRPKFKEITQKLWELRDECVLLKRETRLARLAEIEMEVDKYNESNNVGAGDKEEDSDSSSSEEEEEHQSVGSWVEHISKHDGDHGTVTVKPATEGGLQAQSTPSPDSDSDSDSGDGKPKKKSRLKRFFNCFLSCFTMPAASKKKHGGDD* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0427 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lja2g0427 446 SMART serkin_6 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0427 446 CDD STKc_MAP3K-like 57 309 - -
Lja2g0427 446 Gene3D Phosphorylase Kinase; domain 1 39 131 - -
Lja2g0427 446 Pfam Protein tyrosine and serine/threonine kinase 51 309 IPR001245 GO:0004672|GO:0006468
Lja2g0427 446 ProSiteProfiles Protein kinase domain profile. 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0427 446 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 31 350 - -
Lja2g0427 446 PRINTS Tyrosine kinase catalytic domain signature 280 302 IPR001245 GO:0004672|GO:0006468
Lja2g0427 446 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Lja2g0427 446 PRINTS Tyrosine kinase catalytic domain signature 127 140 IPR001245 GO:0004672|GO:0006468
Lja2g0427 446 PRINTS Tyrosine kinase catalytic domain signature 165 183 IPR001245 GO:0004672|GO:0006468
Lja2g0427 446 MobiDBLite consensus disorder prediction 390 406 - -
Lja2g0427 446 PANTHER SERINE-THREONINE PROTEIN KINASE 31 350 - -
Lja2g0427 446 SUPERFAMILY Protein kinase-like (PK-like) 41 323 IPR011009 -
Lja2g0427 446 MobiDBLite consensus disorder prediction 360 384 - -
Lja2g0427 446 MobiDBLite consensus disorder prediction 339 418 - -
Lja2g0427 446 Gene3D Transferase(Phosphotransferase) domain 1 132 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0427 Lja-Chr2 3916894 3919748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0427 33 361 MAP Kinase Kinase Kinase AT5G66710 51.818 9.42e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja2g0427 PK_Tyr_Ser-Thr 3.9e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0427 - K04427 lja:Lj2g3v1780830.1 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0427 2 3916894 3919748 Lja2g0427 2 3916894 3919748 ECH