Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0426 ATGAATCATCGACCCATTCATCAAGAGCAAATGATGCTTATGTCTCAATTATACCCTGCCGCTACATACAATCAAATCATTTCTCAGCAGCAAGGGGAGAAGAAGCAGCCGCGACGACGCCGTAACAAGAAGAACAGAGGAGGAGAAAATGGAAGCGCTGAAGCCAACAAAAAGAGGAAACTCAGCGAGGAACAAGTGAATCTACTGGAGCAAAATTTTGGTCACGAGCACAAGCTCGAGTCAGAGAGGAAGGACAAGCTGGCAGCGGAGCTCTGTTTGGATCCAAGACAAGTAGCGGTTTGGTTCCAAAACAGAAGAGCAAGGTGGAAGAACAAGAAATTGGAGGAAGAGTACTCCAATCTCAAGAAATCACACGATGCCACCACCTTGGAGAAATGTCACCTGGAGAGTGAGGTGTTCAAGCTGAAACAACAACTATCTGAGGCGGAGAGTGAGATTCAACGACTGCGGATGGAGGGGGCTGATAAAGTTCTTTCGAGCAACAGCTGCAGTTCCTCACAGTCACATTCAATGGAAGCGGTGGAGCCGCCATTTCTGGGAGAGTTTGTGGTTGATGGCTATGATGATGATGTGTTCTATGTGTCACCAGAGGCACAATTAATCAATGCTTATAATGAATGGATTAATCATTTCATGTAG 660 0.4606 MNHRPIHQEQMMLMSQLYPAATYNQIISQQQGEKKQPRRRRNKKNRGGENGSAEANKKRKLSEEQVNLLEQNFGHEHKLESERKDKLAAELCLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHDATTLEKCHLESEVFKLKQQLSEAESEIQRLRMEGADKVLSSNSCSSSQSHSMEAVEPPFLGEFVVDGYDDDVFYVSPEAQLINAYNEWINHFM* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0426 219 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Lja2g0426 219 Coils Coil 52 72 - -
Lja2g0426 219 MobiDBLite consensus disorder prediction 28 62 - -
Lja2g0426 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 218 IPR045224 GO:0003700
Lja2g0426 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 8 218 - -
Lja2g0426 219 Coils Coil 139 159 - -
Lja2g0426 219 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Lja2g0426 219 MobiDBLite consensus disorder prediction 46 62 - -
Lja2g0426 219 Gene3D - 48 121 - -
Lja2g0426 219 CDD homeodomain 57 113 IPR001356 GO:0003677
Lja2g0426 219 SUPERFAMILY Homeodomain-like 56 121 IPR009057 -
Lja2g0426 219 Coils Coil 104 131 - -
Lja2g0426 219 Pfam Homeodomain 57 111 IPR001356 GO:0003677
Lja2g0426 219 SMART HOX_1 55 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0426 Lja-Chr2 3910639 3912331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0426 1 219 Homeobox Transcription Factor Family AT4G36740 54.626 2.01e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lja2g0426 Homeodomain 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0426 K09338 - gmx:100810736 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0426 2 3910639 3912331 Lja2g0426 2 3910639 3912331 ECH