Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0410 ATGGCGAGTGGTTATGGCGAATCAACGCGAGCGGCTCCGAGCACATCTTGCTCGGGGAACAGTCCTAACGATGCTGGTGATTTTGAATGCAATATATGCTTTGAATTGGCTCAGGACCCAGTGATCACTCTCTGTGGTCACCTCTTCTGCTGGCCGTGCCTTTATCGGTGGCTTCATCATCACTCCCAATCTCAGGAGTGCCCTGTCTGCAAAGCCCTCATTCAGGAGGAAAAACTGGTTCCTCTTTACGGGAGGGGCAAAGCACCGACCGATCCCAGGACTAAATCTTATCCTGGAATGGAGATCCCTCGACGTCCTTCTGGTCAGAGGCCACAGACCGCGCCTCCCCCTCCTCCGCCCGGTGCTGCCAACCCTTTTGGGAGTTATGGGTTTGGACTCATGGGAGGTTTCATTCCCATGGCAACAGCCAGGATTGGAAACTTCACTCTTTCCACTGCTTTTGGCGGCTTTATCCCGTCTTTGCTCAACATTCACTTCCACAGCTTCCAGGACACCACAGTCTACGGGACAACCTCTGGTTACCCCTTTGGGTTTAATGCGTTTAATGGAGTAGGGAGCTCGCAAGGTTTTCCGCAGGCGACAACAGGTCAGGTGCAGCAGCAGGAGGACAGTGTTTTGAAGAATCTGCTTTTGTTGATTGGATTTCTTGTTCTTCTTACTGTCATTTTCGTTTGGTAA 699 0.5165 MASGYGESTRAAPSTSCSGNSPNDAGDFECNICFELAQDPVITLCGHLFCWPCLYRWLHHHSQSQECPVCKALIQEEKLVPLYGRGKAPTDPRTKSYPGMEIPRRPSGQRPQTAPPPPPPGAANPFGSYGFGLMGGFIPMATARIGNFTLSTAFGGFIPSLLNIHFHSFQDTTVYGTTSGYPFGFNAFNGVGSSQGFPQATTGQVQQQEDSVLKNLLLLIGFLVLLTVIFVW* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0410 232 SUPERFAMILY RING/U-box 26 83 - -
Lja2g0410 232 MobiDBLite consensus disorder prediction 1 20 - -
Lja2g0410 232 CDD RING-HC_AtRMA_like 28 72 - -
Lja2g0410 232 MobiDBLite consensus disorder prediction 84 122 - -
Lja2g0410 232 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lja2g0410 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 87 IPR013083 -
Lja2g0410 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja2g0410 232 Pfam Zinc finger, C3HC4 type (RING finger) 29 70 - -
Lja2g0410 232 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Lja2g0410 232 SMART ring_2 30 70 IPR001841 -
Lja2g0410 232 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0410 Lja-Chr2 3756132 3757671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0410 6 230 C3H Transcription Factor Family AT2G23780 58.515 8.62e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0410 K10666 - gmx:100814783 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0410 2 3756132 3757671 Lja2g0410 2 3756132 3757671 ECH
Lja5g3209 5 62161675 62164253 Lja2g0410 2 3756132 3757671 ECH