Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0406 ATGCTTCTCGGCCACGATGATGGGTATGTGAGAGACCAAAACATGAAGGTTACAGTTGTGTACAACCATTTTGGACCTAATTGCAACCAGCGCATGCCAAGAATTCGCCATGGATATGCACATGTAGCCAATAATCTTTATCAAGGATGGTTGCAATATGCCATCGGTGGAAGCATGAAACCTAGCCTCAAAAGCGAAGCTAACCTCTTCATAGCACCAACTGCTGGGAATAAAGAGGTAACGTGGAGAAAAGGTAGTCATACAAATGAGGACAAGTGGGAATTTCATTCAGTGAGTGACGCTTTTGAAAATGGAGCCTCTTTCACAGAAACAAAAGGAGGAAGTGTGTGTAAGCCGAATTACAATAAGGAACAAGATTTTGAAGTTAGTGATGCCAAGTCCGTGAAATCATTGACAATGTGGTCAGGTGTACTACGATGCAGCAAAACGTCTATGTGTTGA 462 0.4264 MLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMKPSLKSEANLFIAPTAGNKEVTWRKGSHTNEDKWEFHSVSDAFENGASFTETKGGSVCKPNYNKEQDFEVSDAKSVKSLTMWSGVLRCSKTSMC* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0406 153 Pfam Pectate lyase 1 70 IPR002022 -
Lja2g0406 153 PANTHER PECTATE LYASE 18-RELATED 1 150 IPR045032 GO:0030570
Lja2g0406 153 Gene3D - 1 146 IPR012334 -
Lja2g0406 153 PRINTS Pollen allergen Amb family signature 93 117 IPR018082 -
Lja2g0406 153 PRINTS Pollen allergen Amb family signature 31 50 IPR018082 -
Lja2g0406 153 PRINTS Pollen allergen Amb family signature 53 72 IPR018082 -
Lja2g0406 153 PRINTS Pollen allergen Amb family signature 124 147 IPR018082 -
Lja2g0406 153 PANTHER PECTATE LYASE 1 150 - -
Lja2g0406 153 SUPERFAMILY Pectin lyase-like 1 117 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0406 Lja-Chr2 3714306 3715015 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0406 1 92 Polysaccharide Lyase AT5G09280 71.739 8.98e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0406 K01728 - gmx:100780437 265.388