Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0405 ATGCACTGGTTTCATTCTGCAACTTCAACAATGCATTGCTTTCCCTTCACCCTTATCTTCCTTTCCACCCTCTTCATCTTCTTCACCTTCCCTATCACTCTAGCTCAGCAACCTTACATTGGTTTAGCCACCAATGCGTGCCCTCGCCGGGGAAACTCAAATTCCATCCGCGGCTACACTTGCAACGGCGGCAGTGCAAATCACACTTGCCAAGCTTACCTCACCTTCAGAACTCAACCCATTTACAACTCTGTCTACACAATTTCCACTCTGTTATCCTCTGACGCACGCCACCTAGCTGAAACAATGTCAGTCTCACAAAACACCACCTTCGAAACAAACAAGCTTGTAATCGTTCCTGTTCAATGTTCTTGTGCTGGTGAGTATTACCAGGCAAACACATCATATGCATTTCAGAACACAGACACCCCCTTTTCGATTGCTAACAACACTTTTGAAGGCCTCACAACATGTCAAGCTTTGATGCATGAGAATCACAACCCTGGTCATCTATACCTTGGTAGAGAACTCACAGTTCCTCTTAGATGTGCTTGTCCCACTAAGAATCAAACAGAGAAAGGAATCAAGTACCTCTTGAGTTATCTTGTGAATTGGGGAGATTCTATTTCAGTCATCAGTGAGAAATTTGGTGTCAGCTGTAATAACACTCTTGAAGCTAATTCCCTTTCTCTCACAAAAGCCAAAATTTATCCCTTTACCACACTTTTAGTACCCCTTCATGATAAGCCCTCCAATTCACAAACCATTTTGCAATCTCAACCATCTTCAACCTCATCTTCACCACCACCCTCTTCTTCCACACATCAAAGCTCAAACAAAACGTGGTTGTATGTAGTTGTTGGAGGAGTTTTTGCCTTAATTGTTCTCACTGCTGTCATTTTCTGCATACACTATCACAAGGGTAGGAAGAAAGATGATTCTTTGAGTCAATTGACTGTGTCTGAGAGTTTTGAAAACCAACAATTAGGGAAGGAAATGAAGAAAGGAGATGGAAAATTGTCAGAGTTCATACATGGCATAGCTCAATCTTTCAAAGTGTACAGCTTTGAGGAAATACAGCGTGCAACAAATAATTTGAATTCAAGCAGTTTGATAAAAGGTTCTGTTTATCGCGGTGTTATGAATGGTGATTTGGTTGCAATTAAGAAAACAGAAGGAGATGTATCAAAAGAGATACAAATTCTGAACAAGGTGAACCATTCTAATGTTATACGTCTCTCTGGGGTTAGCTTCAACGAGGGTCAATGGTACCTTGTTTATGAGTATGCTGCTAATGGACCCTTGAGTGAGTGGATTTTCTTTGGGAAGTTTCTGAGTTGGACTCAGAGAATACAGATTGCACTGGATGTGGCCATAGGACTTGACTATCTTCATAGTTTCACTTCTCCTCCTCACATCCACAAGGATCTGAAGAGTAGTAATATTCTTCTGGACAGTGATTTCCGAGCAAAGATTGCAAATTTAAGCCTTGCAAGGTCTGTGAAAGGAGTGGATGAGGATGATCAATTTCTCGCGACAAGGAATATTGTTGGGACAAGAGGTTACATGGCTCCAGAGTATTTGGAAAATGGGCTTGTATCCACAAAGCTTGATGTGTATGCATTTGGGGTACTGATGCTGGAAATCCTCACAGGAAAAGAGGTTGCTGCTATTTTAGCAGAAGATAATAATAAGAATTTGTCAGGCGTTTTAAGTGCTGTACTTGGTGAGGAAAGGCTGAAGGAGTTTATGGATCCCTCTCTTCAATCAAATTATCCATTTGAACTTGCTATGTTTGTGTTTGAAATTATAGTTGGTTGCATAGAGAAAGATCCAGCTAGTCGCCCTTCCATGCAGGAGATTGTACCAACTCTTTCAAGAACCATGAACTCTTCATTGAGTTGGGAAATGTCAGTGAACATCTCAGGATAG 1932 0.413 MHWFHSATSTMHCFPFTLIFLSTLFIFFTFPITLAQQPYIGLATNACPRRGNSNSIRGYTCNGGSANHTCQAYLTFRTQPIYNSVYTISTLLSSDARHLAETMSVSQNTTFETNKLVIVPVQCSCAGEYYQANTSYAFQNTDTPFSIANNTFEGLTTCQALMHENHNPGHLYLGRELTVPLRCACPTKNQTEKGIKYLLSYLVNWGDSISVISEKFGVSCNNTLEANSLSLTKAKIYPFTTLLVPLHDKPSNSQTILQSQPSSTSSSPPPSSSTHQSSNKTWLYVVVGGVFALIVLTAVIFCIHYHKGRKKDDSLSQLTVSESFENQQLGKEMKKGDGKLSEFIHGIAQSFKVYSFEEIQRATNNLNSSSLIKGSVYRGVMNGDLVAIKKTEGDVSKEIQILNKVNHSNVIRLSGVSFNEGQWYLVYEYAANGPLSEWIFFGKFLSWTQRIQIALDVAIGLDYLHSFTSPPHIHKDLKSSNILLDSDFRAKIANLSLARSVKGVDEDDQFLATRNIVGTRGYMAPEYLENGLVSTKLDVYAFGVLMLEILTGKEVAAILAEDNNKNLSGVLSAVLGEERLKEFMDPSLQSNYPFELAMFVFEIIVGCIEKDPASRPSMQEIVPTLSRTMNSSLSWEMSVNISG* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0405 643 Pfam Protein kinase domain 374 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0405 643 Gene3D Transferase(Phosphotransferase) domain 1 431 639 - -
Lja2g0405 643 CDD LysM 200 244 IPR018392 -
Lja2g0405 643 MobiDBLite consensus disorder prediction 251 277 - -
Lja2g0405 643 Gene3D LysM domain 200 248 IPR036779 -
Lja2g0405 643 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 17 639 - -
Lja2g0405 643 Pfam LysM domain 201 245 IPR018392 -
Lja2g0405 643 ProSiteProfiles LysM domain profile. 199 244 IPR018392 -
Lja2g0405 643 SMART LysM_2 200 245 IPR018392 -
Lja2g0405 643 SMART LysM_2 135 180 IPR018392 -
Lja2g0405 643 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 17 639 - -
Lja2g0405 643 SMART serkin_6 369 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0405 643 ProSiteProfiles Protein kinase domain profile. 329 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0405 643 SUPERFAMILY Protein kinase-like (PK-like) 349 625 IPR011009 -
Lja2g0405 643 Gene3D Phosphorylase Kinase; domain 1 341 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0405 Lja-Chr2 3701495 3703645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0405 10 638 Receptor kinase-like Gene Family AT2G23770 42.991 7.25e-166 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja2g0405 Pkinase 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0405 - - gmx:100815842 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0405 2 3701495 3703645 Lja2g0405 2 3701495 3703645 ECH