Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0404 ATGGTCTCTCAGGGTACCAATTCTATCATTTGGCGCTTTTTCTTGCCTATTGTGATTGCCTCCCTTTTCACTCCAAACTTTATTTATGCCAAGCAATCCAAAATAATTGGCTTGAAGATGAATGTGATTGATCGATGTTGGAGACCTAATCCTGAATGGAGGAGGCAACGATATCAACTAGCTACTTGCTCTGTGGGCTATGCTGGCAAGATGACAAATAACATTGGTGATGATCTCATCCATTATAAAGTTATTGACCCTACTGATGACCCTATAAACCCAAGGCCTGGCACGTTGAGGTATGGAGCTTCGGTGATTCAAGGTAAAGTGTGGATCAAATTTCAAAGAGACATGAAAATTAGGCTCGAGAAACCTCTTCTCATTAGTAGTTTCACCACCATAGATGGTCGAGGCGTAAACGTCAACATTGCTGATAATGCGTGCTTGATGATATATAAGGCCACCAACATAATCATACATGGCATTCGAATTCATCATTGCAAAGCTCAAGCTCCAGGGATGGTGATGGGGCCTAATGGAAAAGTTATTACTTTGGGGCAAGTAGATGGGGATGCAATAAGATTGGTTACGGCTTCAAAAATTTGGATTGATCATAACACACTTTATGATTGCGAAGATGGCCTTCTTGATGTCACACGAGGTTCTACTAATGTGACGGTGTCCAACAACTGGTTCAGAGATCAAGACAAGGTTATGCTTCTTGGACATGATGATGGCTATGTGAGAGATCAGGACATGAAGGTCACAGTTGTGTACAATCATTTTGGACCTAATTGCAACCAGCGCATGCCACGGATCCGCTATGGATATGCACATATAGCCAATAATTTTTACCAAGGATGGTTGCAATATGCAATTGGTGGAAGCACAGAACCCATGCGAGATGTTTTTGAAAATGGAGCATCCTTCACGGAAACAAAAGGAGGACATGTGCGTAAGCCAAATTATAGCATAGAACAGAGTTTTGAAGTTTCTGATGCCAAATCTGTGAGATCATTGACAATGTGGTCAGGTGCACTACGATGCAGCAAAACCTCTATATGTTGA 1068 0.4176 MVSQGTNSIIWRFFLPIVIASLFTPNFIYAKQSKIIGLKMNVIDRCWRPNPEWRRQRYQLATCSVGYAGKMTNNIGDDLIHYKVIDPTDDPINPRPGTLRYGASVIQGKVWIKFQRDMKIRLEKPLLISSFTTIDGRGVNVNIADNACLMIYKATNIIIHGIRIHHCKAQAPGMVMGPNGKVITLGQVDGDAIRLVTASKIWIDHNTLYDCEDGLLDVTRGSTNVTVSNNWFRDQDKVMLLGHDDGYVRDQDMKVTVVYNHFGPNCNQRMPRIRYGYAHIANNFYQGWLQYAIGGSTEPMRDVFENGASFTETKGGHVRKPNYSIEQSFEVSDAKSVRSLTMWSGALRCSKTSIC* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0404 355 PANTHER PECTATE LYASE 18-RELATED 300 352 IPR045032 GO:0030570
Lja2g0404 355 PANTHER PECTATE LYASE 18-RELATED 2 299 IPR045032 GO:0030570
Lja2g0404 355 Gene3D - 40 348 IPR012334 -
Lja2g0404 355 Pfam Pectate lyase 128 294 IPR002022 -
Lja2g0404 355 SUPERFAMILY Pectin lyase-like 25 337 IPR011050 -
Lja2g0404 355 SMART amb_all 117 310 IPR002022 -
Lja2g0404 355 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Lja2g0404 355 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Lja2g0404 355 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Lja2g0404 355 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Lja2g0404 355 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Lja2g0404 355 PANTHER PECTATE LYASE 300 352 - -
Lja2g0404 355 PANTHER PECTATE LYASE 2 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0404 Lja-Chr2 3699511 3701012 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0404 71 299 Polysaccharide Lyase AT5G09280 72.926 2.63e-134 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0404 K01728 - gmx:100780437 581.637