Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0403 ATGGCTGTCTTCTTTCTTACCTCTGGCTCTCTGAGTCTTTTTCTTGCACTCACGTTGCTTTTCACTAACATCGCCGCTCGATCAGAAAAGATTAGCGGCCCAGACTTTTCATGCCCTGTTGACTCACCTCCTTCTTGTGAAACATATGTGACATACACAGCTCAGTCTCCAAATCTTCTGAGCCTGACAAACATATCTGATATATTTGATATCAGTCCTTTGTCCATTGCAAGAGCCAGTAACATAGATGCAGGGAAGGACAAGCTGGTTCCAGGCCAAGTCTTACTGGTACCTGTAACTTGCGGTTGCGCCGGAAACCACTCTTCTGCCAATACCTCCTACCAAATCCAGCTAGGTGATAGCTACGACTTTGTTGCAACCACTTTATATGAGAACCTTACAAATTGGAATATAGTACAAGCTTCAAACCCAGGGGTAAATCCATATTTGTTGCCAGAGCGCGTCAAAGTAGTATTCCCTTTATTCTGCAGGTGCCCTTCAAAGAACCAGTTGAACAAAGGGATTCAGTATCTGATTACTTATGTGTGGAAGCCCAATGACAATGTTTCCCTTGTGAGTGCCAAGTTTGGTGCATCCCCAGCGGACATATTGACTGAAAACCGCTACGGTCAAGACTTCACTGCTGCAACCAACCTTCCAATTTTGATCCCAGTGACACAGTTGCCAGAGCTTACTCAACCTTCTTCAAATGGAAGGAAAAGCAGCATTCATCTTCTGGTTATACTTGGTATTACCCTGGGATGCACGTTGCTAACTGCAGTTTTAACCGGGACCCTCGTATATGTATACTGCCGCAGAAAGAAGGCTCTGAATAGGACTGCTTCATCAGCTGAGACTGCTGATAAACTACTTTCTGGAGTTTCAGGCTATGTAAGCAAGCCAAACGTGTATGAAATCGACGAGATAATGGAAGCTACGAAGGATTTCAGCGATGAGTGCAAGGTTGGGGAATCAGTGTACAAGGCCAACATAGAAGGTCGGGTTGTAGCGGTAAAGAAAATCAAGGAAGGTGGTGCCAATGAGGAACTGAAAATTCTGCAGAAGGTAAATCATGGAAATCTGGTGAAACTAATGGGTGTCTCCTCAGGCTATGATGGAAACTGTTTCTTGGTTTATGAATATGCTGAAAATGGGTCTCTTGCTGAGTGGCTGTTCTCCAAGTCTTCAGGAACCCCAAACTCCCTTACATGGTCTCAAAGGATAAGCATAGCAGTGGATGTTGCTGTGGGTCTGCAATACATGCATGAACATACCTATCCAAGAATAATACACAGGGACATCACAACAAGTAATATCCTTCTCGACTCGACCTTCAAGGCCAAGATAGCGAATTTCGCCATGGCCAGAACTTCGACCAACCCCATGATGCCAAAAATCGATGTCTTCGCTTTCGGGGTGCTTCTGATAGAGTTGCTCACCGGAAGGAAAGCCATGACAACCAAGGAGAACGGCGAGGTGGTTATGCTGTGGAAGGATATGTGGGAGATCTTTGACATAGAAGAGAATAGAGAGGAGAGGATCAGAAAATGGATGGATCCTAATTTAGAGAGCTTTTATCATATAGATAATGCTCTCAGCTTGGCATCCTTAGCAGTGAATTGCACAGCTGATAAGTCTTTGTCTCGACCCTCCATGGCTGAAATTGTTCTTAGCCTCTCCTTTCTCACTCAACAATCATCTAACCCCACATTAGAGAGATCCTTGACTTCTTCTGGGTTAGATGTAGAAGATGATGCTCATATTGTGACTTCCATTACTGCACGTTAA 1788 0.4446 MAVFFLTSGSLSLFLALTLLFTNIAARSEKISGPDFSCPVDSPPSCETYVTYTAQSPNLLSLTNISDIFDISPLSIARASNIDAGKDKLVPGQVLLVPVTCGCAGNHSSANTSYQIQLGDSYDFVATTLYENLTNWNIVQASNPGVNPYLLPERVKVVFPLFCRCPSKNQLNKGIQYLITYVWKPNDNVSLVSAKFGASPADILTENRYGQDFTAATNLPILIPVTQLPELTQPSSNGRKSSIHLLVILGITLGCTLLTAVLTGTLVYVYCRRKKALNRTASSAETADKLLSGVSGYVSKPNVYEIDEIMEATKDFSDECKVGESVYKANIEGRVVAVKKIKEGGANEELKILQKVNHGNLVKLMGVSSGYDGNCFLVYEYAENGSLAEWLFSKSSGTPNSLTWSQRISIAVDVAVGLQYMHEHTYPRIIHRDITTSNILLDSTFKAKIANFAMARTSTNPMMPKIDVFAFGVLLIELLTGRKAMTTKENGEVVMLWKDMWEIFDIEENREERIRKWMDPNLESFYHIDNALSLASLAVNCTADKSLSRPSMAEIVLSLSFLTQQSSNPTLERSLTSSGLDVEDDAHIVTSITAR* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0403 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 17 595 - -
Lja2g0403 595 Gene3D Transferase(Phosphotransferase) domain 1 382 460 - -
Lja2g0403 595 Gene3D Phosphorylase Kinase; domain 1 292 381 - -
Lja2g0403 595 Gene3D Transferase(Phosphotransferase) domain 1 461 580 - -
Lja2g0403 595 Pfam Protein tyrosine and serine/threonine kinase 330 458 IPR001245 GO:0004672|GO:0006468
Lja2g0403 595 ProSitePatterns Tyrosine protein kinases specific active-site signature. 429 441 IPR008266 GO:0004672|GO:0006468
Lja2g0403 595 ProSiteProfiles LysM domain profile. 50 97 IPR018392 -
Lja2g0403 595 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 17 595 - -
Lja2g0403 595 SUPERFAMILY Protein kinase-like (PK-like) 298 562 IPR011009 -
Lja2g0403 595 ProSiteProfiles Protein kinase domain profile. 284 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0403 595 Pfam LysM domain 61 98 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0403 Lja-Chr2 3696617 3698404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0403 11 568 Receptor kinase-like Gene Family AT3G21630 30.719 8.39e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja2g0403 PK_Tyr_Ser-Thr 1.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0403 - - gmx:100301877 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0403 2 3696617 3698404 Lja2g0403 2 3696617 3698404 ECH