Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0401 ATGGACGTGGCCGAATTATCCACGGAACAGGTTCTGAGGAGGGACATACCATGGGAGACCTACATGTCCACTAAGCTCATCTCTGGCACAAGCCTTCAGCTCTTAAGGCGTTACGATCACCGATCAGAAAGCCAGAAAGCACAGTTGCTGGATGATGATGGTCCGGCTTATGTGGGTGTGTTTGTTCGTGTTTTGCGTGATATTTTCAAAGAGGAGACGGTAGAATATGTTTTAGCATTGATAGACGAGTTGCTCGCTGCAAATCCGAAAAGAGCTAGGCTGTTTCATGATACGACCCTTGCAGATGAAGACACTTATGAACCTTTCTTAAGAAATTGGTTCATACAGGAGAAAAGTTGTAAGATCCTTGGCTTAATAGCTAGTGCCAGGCCAAAAAATCAGAATGGCATTATTGCAAACGGAGAAGCATCAAAGTCAAAGAAAACCACTATCGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGAACAGCTGAAGAAACCTTCTCATCCTACTCGGGGTGTCCCTACTGCTATCAACTGCCTAGCAACTCTACTTAAGGAACCTGTGGTTAGGTCTACCTTTGTTCAGCTGGATGGGATCAAGTTGCTTGTACCTTTGATTTCTCCTGCATCCACCCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCGATTGAATACCTGGCTACTACAAGAACCCTTCCGCGACTTATTGATGTTGTTAAGAGCTCTACAAAAGAGAAGGTTGTTAGAGTTGTTGTCTCAACCCTCAAGAACTTGCTCCCAAAAGGGACCTTTGGTGCTCAGATGGTTGAACTTCAGCTGCCACAAGTTGTTCAAAGCTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCATTGAATTACCTGGAAGATGGGCTTAAGGATAACATTAAGAAACTAAGTTCCTATGATAAGTATAAGCAAGGAGTTCTGCTTGGCCATCTCGATTGGTCTCCTATGCACAAAGATTCGATATTTTGGCGAGAAAATATCACTAACTTTGAAGAGAATGACTTCCAGATTTTAAGGGTCCTAATAACAATTTTGGACACTTCCAGTGATCCAAGGACTCTGGCTGTTGCTTGCTTTGATCTTTCTCAGTTCGTCCAGCACCATCCTGCTGGGCGTTTCATTGTGACTGACCTTAAAGCCAAGGAACGGGTAATGAAATTAATGAATCATGAGAATGCTGAAGTAACTAAAAATGCGCTTCTCTGCATCCAACGGCTTTTCTTAGGTTCAAAGTATGCCAGCTTCCTACAGGCCTAG 1338 0.432 MDVAELSTEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRSESQKAQLLDDDGPAYVGVFVRVLRDIFKEETVEYVLALIDELLAANPKRARLFHDTTLADEDTYEPFLRNWFIQEKSCKILGLIASARPKNQNGIIANGEASKSKKTTIDDVLIGLVKWLCEQLKKPSHPTRGVPTAINCLATLLKEPVVRSTFVQLDGIKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATTRTLPRLIDVVKSSTKEKVVRVVVSTLKNLLPKGTFGAQMVELQLPQVVQSLKAQAWSDEDLLEALNYLEDGLKDNIKKLSSYDKYKQGVLLGHLDWSPMHKDSIFWRENITNFEENDFQILRVLITILDTSSDPRTLAVACFDLSQFVQHHPAGRFIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGSKYASFLQA* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0401 445 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 445 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lja2g0401 445 PIRSF V-ATP_synth_H 2 444 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lja2g0401 445 Gene3D - 3 324 IPR011989 -
Lja2g0401 445 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 445 - -
Lja2g0401 445 SMART arm_5 234 275 IPR000225 GO:0005515
Lja2g0401 445 SMART arm_5 188 233 IPR000225 GO:0005515
Lja2g0401 445 SMART arm_5 395 435 IPR000225 GO:0005515
Lja2g0401 445 Gene3D - 336 437 IPR038497 -
Lja2g0401 445 Pfam V-ATPase subunit H 322 434 IPR011987 GO:0000221|GO:1902600
Lja2g0401 445 Pfam V-ATPase subunit H 5 316 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lja2g0401 445 SUPERFAMILY ARM repeat 8 436 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0401 Lja-Chr2 3687625 3692140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0401 1 445 Primary Pumps ATPases(2) AT3G42050 78.000 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0401 K02144 - gmx:100788723 782.326