Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0400 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCCAACCATAAAATTTCCCAAGGACAATACAATGCCAAATATGGAGAAGATAGAATCTGGGATAATCATCCGAGTCCTGTGGATGATTTGACAGATATTGAGAAAGAAGAAATTGAATGTGCGATTGCACTCTCTCTGTCCGAGGAGGATCATAAAGGGAAAAGACCTGTTGTGGAAGAAGACTCTCAATCTGAAGAAGATGAACAACTTTGTAAAATTGATGAGGAGGAAGATGAAAATCTCAGTAAAGTTAAATCAGAGGAAGATGAACATCTTGATAAAGTTCAAGTAGACGAAGATGAACTTCTTGCTAAAATTCAGGATGAAGAACATCTTGCTAAAGATCAACTTGAGGAAGATGAGCAACTTGCCAGGGCAATTCAGGAAAGTTTGAGAATTGATTCTCCTCCTCGATATGGCGGTGATTCAATATTTCCATTCCCCAACCTCTTTCCACCTGGATACAGAGTCTGTGCTGGATGCAAAACTGGGATTGGCCAAGGAAGATTTTTAAGCTGCATGGGAGCTGTCTGGCATCCCCAATGCTTTTGCTGCCATGCTTGCCATCTGCCAATCACTGATTATGAGTATTCCATGTCTAAAGATCATCCTTACCATAAATCCTGCTATAGGGAGAAGCATCACCCAAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCAGCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATATTGCCCGTCACATGAGCATGACGGAACTCCTCGTTGCTGTAGCTGTGAAAGAATGGAGCCAAGGGATACAAAATATCTTTTGCTCAATGATGGTCGAAAGCTATGTCTAGAGTGTCTAGACTCAGTAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAGTTTTATGAAGGTTTAAATATGAAAGTGAAGCAGCAGGTTCCTATGCTTTTGGTTGAGAGGCAAGCACTGAATGAGGCAATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCGGAAGAGCAAACTGTCACCACCATTTTAAGGAGACCAAGTATCGGAGCAGGGTACCAAACTGTAGACATGATAACTGAGCCACATAGATTGACGCGTCACTGTGAAGTGACAGCTATTCTTGTTTTGTACGGCCTTCCTAGATTACTGACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAACCTGAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTAGCTCATATGTGGTTAGAGTCAGAGCTCTATTCAGGATCTGCGAATGGCGGCGCATCATCTTCATCCTCAGCACCACCATCCTCCTCTACTGCATCGTCAAAGAAGGGTAAACGATCTGATTTTGAAAAGAAATTTGGTGAGTTTTTTAAACACCAGATTGAGTCGGATACCTCGTCAGCTTATGGAGATGGATTCAGATTGGGTAACCAGGCAGTGCTCAAGTATGGGCTCAAAAGGACCCTTGACCATATCCTGATGACAGGAAGTTTTCCAGTCTAA 1605 0.4262 MGWFTKLLKGSNHKISQGQYNAKYGEDRIWDNHPSPVDDLTDIEKEEIECAIALSLSEEDHKGKRPVVEEDSQSEEDEQLCKIDEEEDENLSKVKSEEDEHLDKVQVDEDELLAKIQDEEHLAKDQLEEDEQLARAIQESLRIDSPPRYGGDSIFPFPNLFPPGYRVCAGCKTGIGQGRFLSCMGAVWHPQCFCCHACHLPITDYEYSMSKDHPYHKSCYREKHHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHEHDGTPRCCSCERMEPRDTKYLLLNDGRKLCLECLDSVIMDTHECQPLYLEIQEFYEGLNMKVKQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPSIGAGYQTVDMITEPHRLTRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSANGGASSSSSAPPSSSTASSKKGKRSDFEKKFGEFFKHQIESDTSSAYGDGFRLGNQAVLKYGLKRTLDHILMTGSFPV* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0400 534 ProSiteProfiles LIM domain profile. 166 226 IPR001781 -
Lja2g0400 534 MobiDBLite consensus disorder prediction 457 480 - -
Lja2g0400 534 SMART lim_4 167 219 IPR001781 -
Lja2g0400 534 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 128 147 IPR003903 -
Lja2g0400 534 ProSitePatterns LIM zinc-binding domain signature. 168 202 IPR001781 -
Lja2g0400 534 MobiDBLite consensus disorder prediction 457 476 - -
Lja2g0400 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 193 - -
Lja2g0400 534 Pfam Protein DA1 317 528 IPR022087 -
Lja2g0400 534 Gene3D Cysteine Rich Protein 162 226 - -
Lja2g0400 534 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 533 - -
Lja2g0400 534 Pfam LIM domain 168 223 IPR001781 -
Lja2g0400 534 CDD LIM_DA1 168 220 - -
Lja2g0400 534 PANTHER PROTEIN DA1-RELATED 2 1 533 IPR045218 -
Lja2g0400 534 Coils Coil 113 133 - -
Lja2g0400 534 SMART uim 43 62 IPR003903 -
Lja2g0400 534 SMART uim 128 147 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0400 Lja-Chr2 3679729 3686319 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g0400 DA1-like 3.5e-103 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0400 - - gmx:100817969 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0400 2 3679729 3686319 Lja2g0400 2 3679729 3686319 ECH
Lja2g0400 2 3679729 3686319 Lja4g3256 4 61291914 61298617 PCT