Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0398 ATGGGAATAGCAACATCACCACCACTCCCATCCAATATTCTTCTCTCTCAACAGCATTCCAATTCTATGTCCCAAGATTATCACCACCACCACCAGCAGCAAGGAATCTTCACCTTCTCAAATGGGTTGGAGAGATCAGCTGCGCCGCCATCGCCACAGCAGATCCGGAGGGACAACAAATTTAGACCGCAGCAAAGCGGGTTCGAGGCAGCACCGGCATTAGAAGCAATAGAGGAAGGGCTTCCTCCGGTTTACGAAACCGCCGGGATGTTGTCGGAGATGTTTAATTTCTCTCCCGCCACCGCGGCAGAATTGTTGGAGCAGCAGCACATGTCAGCCACGTTTCGGTCCAGGCCGCCGCCGCAAGGAGTGGCAAGTAGCAGTGAGTGGTACGGTGGTGGTGGAAGAAATCAAAACAGCCACCAGCATCAGATTACAGATTCAGCTGCTGCCATGCAGCTTTTTCTGATGAACCCTCCTCCTCCACCTTCTCAAACAAGATCGCCTTCTCCTCCTCCGCATAACCGTCAAGCAGAAACTTCCTCCACACTTCACATGCTTCTTCCTAATCCTGCAGCTTCTTCCAATTCCCTGCAAGGCTTTCCAGGCTCGGGAGGGTCTTATGGACAATTCACATGGGTTCCTGAAAATTCACAAGAAGCTGGAGGCCTTAACAACAACACACCTTCAGAAATTGGAGGTGTTGTGGAAGGTCAAGGTCTTTCATTATCACTCTCATCTTCTTTGCAGCACTTAGAAGCTGCAAAAGCTGAAGAATTGAGAATGGGTGATAATTCTGGTTTTCTATATTTCAATCAAGGAGCACCTTCCAATTCTTCTTCTTCCTCTCAGTATCAGTACAAGACTCATAATCCTAGTCCACAAGCATTGCATTTGCAAGGGGGAACTATAATCCACAACCACCACCAGGGATATGGAGGGTCATCATTAGGTGCAGTGAATGTTCTCAGAAATTCAAAGTATGTGAAGGCAGCTCAGGAATTGCTGGAAGAGTTTTGCAGTGTTGGGAGGGGTCAATTTAAGAAAAGCAAGTTCAGTAACCAGAATTCATCAAATCCTGGTGGTGGCGGTGGCGGCGGTGATTCTTCAAAGGAAGCTCCTCCTCCTCCGCCGTTGTCAGCAGCTGATAGAATTGAGCATCAGAGAAGGAAGGTCAAACTCCTAGCCATGCTTGATGAGGTTGACCGAAGATACAACCACTACTGCGAGCAAATGCAGATGGTGGTGAATTCATTTGACCTCATGATGGGGTTCGGTGCGGCAGTTCCATACACAGCACTGGCGCAGAAGGCAATGTCTCGGCACTTCCGGTGCCTGAAGGAGGCGATTGCGGCACAGCTAAAGCACAGTTGTGAGGTGCTGGGGGAGAAAGATGGGGCCGGGGGTTCAGGCTTGACGAGGGGAGAGACGCCGAGGCTGAAGATGCTGGAGCAGAGCCTGAGACAGCAGAGAGCGTTCCAGCAGATGGGGATGATGGAACAGGAAGCTTGGAGACCACAGAGAGGGTTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTTGAGCATTTTCTTCACCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCAAGACAGACTGGGCTATCAAGAAATCAGGTATCAAACTGGTTCATAAATGCCAGGGTACGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACGCAAAGAAGTAGAGTGTGCAGAAGAGAGAGAAAGGAACCAAAGCAATAGTGGCCAACAACAAGCACAAACTCCAACCACACCACCATCATCTGCAACATCAACAGCGCCACCACCTCCAACAACAACAACGACAAAACCAACAGGCAAAAGATCCGATATCAATGCCACTGAAAGCGACCCTTCACTCCATGCAATCAATAGATCACAAAGCTTCTCGGAAAACCAAGCAAACCATTCAGCCACCACCACGGCCATCAACAATGCCACCACCGCCTCTGAGGTGGCGCCACCCGTGTCTCAGTGCTTTGACTCAGTCTCAGACGATGACCTGCCACCGCACAGGTCAATTATGGCCGCAGACGACAAGTGTCGCCATGGCAGCTTGGTTGCAGCAGATTACGGGACCGCGCCTGCAAGTGGTGGTGGTGGTGACATTGGATCCACACTCATCAGATTTGGGACCACCGCCGGTGACGTGTCACTCACCCTAGGGCTACGCCACGCCGGGAACACGCCGGAGAAAACTAATTCCTTCTCTGTTAGAGACTTTGGAGGGATTTAA 2283 0.505 MGIATSPPLPSNILLSQQHSNSMSQDYHHHHQQQGIFTFSNGLERSAAPPSPQQIRRDNKFRPQQSGFEAAPALEAIEEGLPPVYETAGMLSEMFNFSPATAAELLEQQHMSATFRSRPPPQGVASSSEWYGGGGRNQNSHQHQITDSAAAMQLFLMNPPPPPSQTRSPSPPPHNRQAETSSTLHMLLPNPAASSNSLQGFPGSGGSYGQFTWVPENSQEAGGLNNNTPSEIGGVVEGQGLSLSLSSSLQHLEAAKAEELRMGDNSGFLYFNQGAPSNSSSSSQYQYKTHNPSPQALHLQGGTIIHNHHQGYGGSSLGAVNVLRNSKYVKAAQELLEEFCSVGRGQFKKSKFSNQNSSNPGGGGGGGDSSKEAPPPPPLSAADRIEHQRRKVKLLAMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKEAIAAQLKHSCEVLGEKDGAGGSGLTRGETPRLKMLEQSLRQQRAFQQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQERKEVECAEERERNQSNSGQQQAQTPTTPPSSATSTAPPPPTTTTTKPTGKRSDINATESDPSLHAINRSQSFSENQANHSATTTAINNATTASEVAPPVSQCFDSVSDDDLPPHRSIMAADDKCRHGSLVAADYGTAPASGGGGDIGSTLIRFGTTAGDVSLTLGLRHAGNTPEKTNSFSVRDFGGI* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0398 760 MobiDBLite consensus disorder prediction 350 386 - -
Lja2g0398 760 MobiDBLite consensus disorder prediction 155 180 - -
Lja2g0398 760 Pfam Associated with HOX 322 451 IPR006563 -
Lja2g0398 760 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 747 - -
Lja2g0398 760 MobiDBLite consensus disorder prediction 350 364 - -
Lja2g0398 760 MobiDBLite consensus disorder prediction 272 292 - -
Lja2g0398 760 SUPERFAMILY Homeodomain-like 506 571 IPR009057 -
Lja2g0398 760 Pfam Homeobox KN domain 521 560 IPR008422 GO:0003677|GO:0006355
Lja2g0398 760 Gene3D - 507 569 - -
Lja2g0398 760 MobiDBLite consensus disorder prediction 156 170 - -
Lja2g0398 760 SMART HOX_1 504 568 IPR001356 GO:0003677
Lja2g0398 760 MobiDBLite consensus disorder prediction 586 603 - -
Lja2g0398 760 Coils Coil 570 590 - -
Lja2g0398 760 CDD homeodomain 504 565 IPR001356 GO:0003677
Lja2g0398 760 ProSiteProfiles 'Homeobox' domain profile. 501 564 IPR001356 GO:0003677
Lja2g0398 760 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 74 747 - -
Lja2g0398 760 MobiDBLite consensus disorder prediction 618 634 - -
Lja2g0398 760 MobiDBLite consensus disorder prediction 577 634 - -
Lja2g0398 760 MobiDBLite consensus disorder prediction 114 143 - -
Lja2g0398 760 SMART prehox3 317 452 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0398 Lja-Chr2 3635446 3642757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0398 1 551 Homeobox Transcription Factor Family AT4G36870 52.805 1.52e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja2g0398 POX 2.7e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0398 - - gmx:100786231 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0398 2 3635446 3642757 Lja2g0398 2 3635446 3642757 ECH
Lja2g0398 2 3635446 3642757 Lja4g3257 4 61333647 61342951 ECH
Lja2g0398 2 3635446 3642757 Lja4g3257 4 61333647 61342951 PCT