Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0395 ATGGAAGTACTGCCTTGTTCTGGTGTTCAATATGCTGGGGATTCTGATTGCCCTCAGAGGAGCTCAGGGACCGCTTTTGTATTCCAGGAAGAACCTAGTTTCCCTGAGAATGGTGAACTGGCTAAATTGGCCGATGGTCAACTGAATGAATCATTGGATGAGATGCAAGGGGCACAGATAGAAAGGAAAGGTGAAGGGAAACAGACTAATTCAGATTGTCAGTGCATTGGAGCTTCATGTTGTGACTGTCAGGTGGAAGATCAAAAGCTAGACTGTCGTTTCAATTATTTTGAAGGAGATGTCGAAAATGAACCTTGCTTAGCTTCTGAGAACACCCTTTCTGTCGTGGACACAATTGAAAGTGAATCACCAAACAACAATAGGGAAGGAGACTTGTTATTTTCTGAACCCAAGTGGCTAGAAGGGGATGAATCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGTATCCGATGTGCAAGGGCTGACTGGCCGCTATCAACTTTGAAAGCAAAGCCGACTCATGACCGAAAGAAATATTTTGTCATATTTTTTCCACATACAAAGATTTATTCTTGGGCGGATATGCTGCTTGTTAGATCAATTGACGAGTTTCCCCATCCTATTGTATACAAGAATCATCAGGTTGGATTAAAACTGGTAAAAGACTTAACAGTTCCAAGGCGGTTTATAATGCAAAAGCTAGCTGTTGGGATGTTGAACATCATTGATCAATTTCATTTTAATGCTTTGACAGAAACTGCCCGTGATGTAGAGGTCTGGAAAGGATTCGCTATGGAGGCTTCTCGTTGCAATGGTTATTCTGATTATGGAAGAATGCTTCTAAGGCTACATAATAGCATTCTGCAGCACTACATAAATGTTGATTGGTTGCAACATTCTTATCATTCTTGGGTTGAACGATGTCAGAATGCAAATAGTGCCGAGTCAGTAGAGCTGCTCAAGGAGGAATTGTTTGACTCTGTTTTGTGGAATGATGTCAACACGCTGTGGGATGTACCAGTGCAACCAATATTAGGTTCTGAATGGAAGACCTGGAAGCATGATGTAGGGAAATGGTTTTCGACATCACGTTCCTTCTCTAGCAGCAATGACATACAGACACAGTGGCATATTTCTGATGATTCATACCAAACAAACCTTCAGGTTTGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAATCAAGGGTTCAGATCGATCTATTACTCTTGAGGCTGACCCTGGATTCTTTAATAATCAGGAAACATTGAGCACAAATGCAGCTGAGACATGTGGTAAACAGGAAGGCATTAGGGAGGTGCTTCTGGCATCTGACTTTCCTAGTCCTATGGACAACAAATGGAAAGAAATCGTAGTTGAGGCTGCTGATTCTGATTTCTTGCAGACCAAAGGAATGGAATTGACCCCTATAAATGAAATGGCTGTTGCAAAATCTGTAGAACCTGGTAGTAAGAATCGACAGTGTACAGCTTATATTGAAGCCAAGGGAAGACAGTGTGTGAGATGGGCAAACGAAGGTGATGTATACTGTTGTGTTCATTTGTCATCCCGTTTTTTGGGCAGCTCTGCAAAAGCTGAAAAGTCAGTTCAAGTTGATGCTCCTATGTGTGGAGGTACCACTGTTCTGGGTACTAGTTGTAAGCATCGGGCCCTACCAGGCTTTTTATTCTGTAAGAAGCACCGGCCCCATGCTGAAACAGCAGAACAAGTCTCAAATTTACCCCAGAATTCACTGAAGAGGAAGCATGAAGAGAATCATACTGGTTCAGAGGACACATTCTGCCGAGATATGGTATTGGTAGATGTCGAAGGTCCACTGCAAGTGGATCCTGTGCCATCCTTTGCCAGTGATTCCTTACATGGAGAAAGCAACTTGGCTGAGAAGCCAGTGCATTCTGAAAATGATCATAGTGCGATGGAGGCTCTAAACTGTATGGGTTCTCCTTCCTCTGATAACCAGAATCCTTGTATGGAAGCTCCTAAACGATATTCCTTGTACTGTGATACACATCTTCCAAGCTGGCTTAAACGTGCGAGAAATGGGAAGAGCAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAAGGAATGCAGCTCATGGGAGAAAAAGGTACACCTGCATAAAGCATGTGAGCTTTTTTACAGACTATTCAAAAGCATTTTATCACTAAGAAACCCAGTTCCTAAGCATGTCCAATTCCAGTGGGCTTTGAATGAAGCCTCTAAAGATAGTGGTGTTGGAGAATTTTTCACAAAATTGGTTCATAGTGAAAAAGCAAGAACCAAATTGTTGTGGGAATTCAATGATGACATGAATGTATCCTCTGTCGTGGAAGAACAACTTCTCTTGCCATCCACAGTTAATAATAGCTATGATAATGAAAATGCCATCAAGTGTAAGATTTGCTCCACAGAGTTTCTCGATGACCAAGCACTTGGTAACCATTGGATGGACAGTCATCATAAGGAAGCACAATGGCTGTTTAGAGGTTATGCATGTGCTATTTGTTTGGATTCTTTTACTAACAAGAAACTTTTGGAAACCCATGTTAAAGAGAGACACCATGTGCAATTTGTTGAACAATGCATTCTTCTCCAATGCATTCCATGTGGCGGTCATTTTGGAAATACTGAGCAATTATGGCAGCATGTTTTATCAGTTCACCATGCTGAATTTAAGCCATCAAAATCTCCTGAGCCACAAACTTTCTCTTCTGGTGAAGATTCACCAGTAAAACAAGACCACAGAAATTCAGCCTCTTTGGAAAATAATTCTGAGAATCTGGGTGCCACACGGAGGTTTGTTTGCAGGTTTTGTGGGTTGAGATTTGATTTACTACCTGACCTAGGTCGACATCACCAAGCAGCTCATATGGGGGCCAATCTGGCTAACGGCCGTCCTGCTAAGAAGGGAGTTCGCTATCACTCATATAGATTAAAATCTGGCAGATTAAGCCACCCTAGATTTAAAAAGGGTTTAACATCAGCATCATACAGGATGAGAAAAAAGGCTAATGCTAATAAGTTAAAGCAATGCATTCAGGCAAAGAACTCACTCAATGGGGAAGGAGTAACTGCACAACCTCATGTGAATGAAACATCAGATGTTGGTGGATTAACAGAACATCAATGCTCAGCTGTTGCAAAAATTTTGTTTTCAGAGATTGAGAAAACTAAACCACGGCCTAACAATCTTGATATCTTATCAATTGCTCGCTCTGCTTGCTGCAGAGTTAGTCTCGTAGGCTCCCTGGAGGAGAAATATGGAATTCTGCCTGAAAGGTTCTATTTGAAGGCAGCAAAACTTTGTAGCGAGCATAATATTGTTGTGAGTTGGCACCGGGAGGGGTTTGTTTGTCCTAGAGGCTGTGGTGTAGCAAAGGATCAAGCATTTCTCTTTCCTTTAGCATCTCTTCCTAATGGTTTTCCAAAACCTATAAATTTATCTGATCCTGTAAATGATGACTGGGAGGTGGATGAGTTTCACTGCATCATTGATTCACGCAGTTTAAAATTAGATTCACAGCAAAAGGCCACAGTCTTGTGTGATGACATTAGCTTTGGGAAGGAGTCAATTCCAGTGATTTGTGTAGTTGATCATGAACTGCTGCATTCTCTACATACAGACGGGTCTAATGAACAAGTTATAAATTCTTCTAGACCTTGGGAGAGCTTTACCTATGTTACAAAGCCAATACTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAGTTGGGATGTGCCTGCTCATATTCTACCTGCTGTCCCGAAACATGTGATCATGTTTATCTTTTTGGTACTGACTATGTTGATGCTAAAGACGTATTTGGGAAACCAATGCGTGACAGGTTCCCATATGATGAGAATGGTCGAATAATATTGGAGGAAGGTTACCTTGTCTATGAGTGTAATGATATGTGCAGATGCAATAAATCCTGTCCGAACAGAATATTACAGAATGGAGTACGAGTCAAATTGGAAGTGTTTAAAACAGAGAAGAAGGGATGGGCAATGAGGGCTGGTGAAGCTATTCTGCGTGGCACATTTGTGTGCGAGTTCATTGGAGAGGTTTTAGGTGTGCAGGAAGCAGACAATAGGCGCAAGAGATATGGCACGGGGAATTGCAGTTATTTCTTTGACATCAATGATCGTGTTAATGATATTGGCAGAATGATTGGAGGACAAGCCCAATATGTAATTGATGCATCTAAATATGGAAATGTGTCAAGGTTCATCAATCATAGCTGCTCACCCAATCTTGTCAGTCATCAAGTTCTCATAGAGAGCATGGATTGTGAGCGTACACATATCGGTCTTTATGCAAGTCGAGATATTGCTTTGGGTGAAGAGCTGACTTATGACTATCAGTATGAGCTTGTGCCTGGAGAAGGATCGCCTTGTCTTTGCGAATCGTTGAAGTGTAGGGGGCGCCTTTACTAG 4506 0.4188 MEVLPCSGVQYAGDSDCPQRSSGTAFVFQEEPSFPENGELAKLADGQLNESLDEMQGAQIERKGEGKQTNSDCQCIGASCCDCQVEDQKLDCRFNYFEGDVENEPCLASENTLSVVDTIESESPNNNREGDLLFSEPKWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVIFFPHTKIYSWADMLLVRSIDEFPHPIVYKNHQVGLKLVKDLTVPRRFIMQKLAVGMLNIIDQFHFNALTETARDVEVWKGFAMEASRCNGYSDYGRMLLRLHNSILQHYINVDWLQHSYHSWVERCQNANSAESVELLKEELFDSVLWNDVNTLWDVPVQPILGSEWKTWKHDVGKWFSTSRSFSSSNDIQTQWHISDDSYQTNLQVCRKRPKLEVRRADTHASQVEIKGSDRSITLEADPGFFNNQETLSTNAAETCGKQEGIREVLLASDFPSPMDNKWKEIVVEAADSDFLQTKGMELTPINEMAVAKSVEPGSKNRQCTAYIEAKGRQCVRWANEGDVYCCVHLSSRFLGSSAKAEKSVQVDAPMCGGTTVLGTSCKHRALPGFLFCKKHRPHAETAEQVSNLPQNSLKRKHEENHTGSEDTFCRDMVLVDVEGPLQVDPVPSFASDSLHGESNLAEKPVHSENDHSAMEALNCMGSPSSDNQNPCMEAPKRYSLYCDTHLPSWLKRARNGKSRIVSKEVFTELLKECSSWEKKVHLHKACELFYRLFKSILSLRNPVPKHVQFQWALNEASKDSGVGEFFTKLVHSEKARTKLLWEFNDDMNVSSVVEEQLLLPSTVNNSYDNENAIKCKICSTEFLDDQALGNHWMDSHHKEAQWLFRGYACAICLDSFTNKKLLETHVKERHHVQFVEQCILLQCIPCGGHFGNTEQLWQHVLSVHHAEFKPSKSPEPQTFSSGEDSPVKQDHRNSASLENNSENLGATRRFVCRFCGLRFDLLPDLGRHHQAAHMGANLANGRPAKKGVRYHSYRLKSGRLSHPRFKKGLTSASYRMRKKANANKLKQCIQAKNSLNGEGVTAQPHVNETSDVGGLTEHQCSAVAKILFSEIEKTKPRPNNLDILSIARSACCRVSLVGSLEEKYGILPERFYLKAAKLCSEHNIVVSWHREGFVCPRGCGVAKDQAFLFPLASLPNGFPKPINLSDPVNDDWEVDEFHCIIDSRSLKLDSQQKATVLCDDISFGKESIPVICVVDHELLHSLHTDGSNEQVINSSRPWESFTYVTKPILDQSLSLDSESLQLGCACSYSTCCPETCDHVYLFGTDYVDAKDVFGKPMRDRFPYDENGRIILEEGYLVYECNDMCRCNKSCPNRILQNGVRVKLEVFKTEKKGWAMRAGEAILRGTFVCEFIGEVLGVQEADNRRKRYGTGNCSYFFDINDRVNDIGRMIGGQAQYVIDASKYGNVSRFINHSCSPNLVSHQVLIESMDCERTHIGLYASRDIALGEELTYDYQYELVPGEGSPCLCESLKCRGRLY* 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0395 1501 MobiDBLite consensus disorder prediction 586 609 - -
Lja2g0395 1501 SUPERFAMILY SET domain 1197 1491 IPR046341 -
Lja2g0395 1501 Pfam Pre-SET motif 1207 1338 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g0395 1501 SMART preset_2 1203 1330 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g0395 1501 MobiDBLite consensus disorder prediction 914 945 - -
Lja2g0395 1501 ProSiteProfiles Pre-SET domain profile. 1267 1343 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja2g0395 1501 ProSiteProfiles SET domain profile. 1346 1478 IPR001214 GO:0005515
Lja2g0395 1501 ProSitePatterns Zinc finger C2H2 type domain signature. 820 842 IPR013087 -
Lja2g0395 1501 ProSiteProfiles Zinc finger C2H2 type domain profile. 852 875 IPR013087 -
Lja2g0395 1501 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1501 - -
Lja2g0395 1501 SMART c2h2final6 852 875 IPR013087 -
Lja2g0395 1501 SMART c2h2final6 818 841 IPR013087 -
Lja2g0395 1501 SMART c2h2final6 955 978 IPR013087 -
Lja2g0395 1501 SMART c2h2final6 886 909 IPR013087 -
Lja2g0395 1501 Gene3D Classic Zinc Finger 800 878 - -
Lja2g0395 1501 Pfam Zinc finger C2H2-type, 3 repeats 854 979 IPR040689 -
Lja2g0395 1501 ProSitePatterns Zinc finger C2H2 type domain signature. 957 978 IPR013087 -
Lja2g0395 1501 ProSitePatterns Zinc finger C2H2 type domain signature. 888 910 IPR013087 -
Lja2g0395 1501 ProSiteProfiles Zinc finger C2H2 type domain profile. 955 983 IPR013087 -
Lja2g0395 1501 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1501 - -
Lja2g0395 1501 ProSiteProfiles Zinc finger C2H2 type domain profile. 886 915 IPR013087 -
Lja2g0395 1501 Pfam SET domain 1357 1477 IPR001214 GO:0005515
Lja2g0395 1501 SMART set_7 1346 1484 IPR001214 GO:0005515
Lja2g0395 1501 ProSiteProfiles Post-SET domain profile. 1485 1501 IPR003616 -
Lja2g0395 1501 Gene3D SET domain 1183 1482 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0395 Lja-Chr2 3608446 3619133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0395 101 1500 C2H2 Transcription Factor Family AT2G23740 50.280 0.0 1372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja2g0395 Pre-SET 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0395 - - gmx:100786757 2410.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0395 2 3608446 3619133 Lja2g0395 2 3608446 3619133 ECH