Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0374 ATGGATGTATTCTTTGAGCTGCCAAGAGGGAGGCCATTTTCCATTGAAGTAGGCTTCTTTGACACTGTCCTAGAGATTAAAGAGAAGGTGCAAAAGTATCAGGGCATTCCCATCTCAAAGCAAACTCTGATCCTCAAAGGTCAAGTTCTCCAAGATGATGGTGATGTTTGGAAGTATGAAATCCTTCAAAACTCACGCATTCAGCTAGTTGTCACTCCAGACTCAGACAAGCCGGCACTCATGGTCAAGAATGAGGAGTTTTCTTCATCACCCCCCACCAAAATTCATGATCATGAGTCAGATAACTGTGACAATGATGTGAGTATTCGACCATCAGCTACAACTTCAGCAGCAACTGTTGCTAACACTGGTCCAGGAGGGTCAAAGAAGTTGAAGGTTTGGGCCAAAAGTGGGACAAAGAAGATACCTGTAGAAGTGAATGCTTCTGATAATGTGGCGGAGTTAAGGAAGGAGCTGAATAAGTTACAGCAGAGGCTTCAGTTTCATCTTCCACAAGAAGGTTACTTTTTTATTTATGAACAAAATGTTATGAATGATGATAGGTCTTTTCGCTGGCACCATGTTAAGCAGGGCGACACCATTGAAATCTTCAACGGAAGTGTTACTGGTGGATCATAA 639 0.4257 MDVFFELPRGRPFSIEVGFFDTVLEIKEKVQKYQGIPISKQTLILKGQVLQDDGDVWKYEILQNSRIQLVVTPDSDKPALMVKNEEFSSSPPTKIHDHESDNCDNDVSIRPSATTSAATVANTGPGGSKKLKVWAKSGTKKIPVEVNASDNVAELRKELNKLQQRLQFHLPQEGYFFIYEQNVMNDDRSFRWHHVKQGDTIEIFNGSVTGGS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0374 212 SUPERFAMILY Ubiquitin-like 103 203 IPR029071 -
Lja2g0374 212 CDD Ubl_ubiquitin_like 3 70 - -
Lja2g0374 212 Pfam Ubiquitin family 138 202 IPR000626 GO:0005515
Lja2g0374 212 Pfam Ubiquitin family 6 73 IPR000626 GO:0005515
Lja2g0374 212 PANTHER UV EXCISION REPAIR PROTEIN RAD23 99 211 - -
Lja2g0374 212 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 92 - -
Lja2g0374 212 ProSiteProfiles Ubiquitin domain profile. 129 210 IPR000626 GO:0005515
Lja2g0374 212 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lja2g0374 212 Gene3D - 128 205 - -
Lja2g0374 212 CDD Ubl_ubiquitin_like 140 204 - -
Lja2g0374 212 Gene3D - 1 81 - -
Lja2g0374 212 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED 99 211 - -
Lja2g0374 212 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED 1 92 - -
Lja2g0374 212 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lja2g0374 212 SMART ubq_7 131 206 IPR000626 GO:0005515
Lja2g0374 212 SMART ubq_7 1 72 IPR000626 GO:0005515
Lja2g0374 212 Coils Coil 145 165 - -
Lja2g0374 212 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0374 Lja-Chr2 3448162 3448800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0374 1 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 1.67e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0374 - - lja:Lj2g3v1829920.1 422.55