Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0367 ATGGACCTGTGTTTGGATTTGAGTTTAGCCTCTTCCCCTTCCCTGTTTCTCGGTGATGTTTCTCGCAGGAGCAGAGACATGTCTGAGAAACTCGCCATGCTTGAGAACTATGTTCAGAGATTGGAGGATGAAATGAACAAGGTTGAAGCCTTCAAACGCGAGCTCCCTCTTTGCATGCTCCTGGTCAAAGAAGCCATAGCAAGGTTGAAGGAGGAAAAACTCCAGTGTTTGGGAAAGCAAGATCCACCTGCTGCTGCTGCTGCTGCTGCTGAAGAATCCACGCCCAATTGTGGAGCTAATGGGAAAGGACCAGGGATTACCATGGAAAAGGACAAGAACAATTGGATGAGCACAGTTCAGCTATGGTGCGCACAAACCAAATCGAAGAATGTAGAAGGTGATAGGTCTGTGCCTGAGAAACCAATTCAACTAATGAATCCAAATAAGACTAGTGTTGGGGGAGGGTTTATGACATTCATTGCGGATTCGCGTGTTCCTAAGGAGGTTTCACATGTTCCAAGCTTCAAAATCACTCCGGCGGCTCAACTGAGTCATAGCAATTCCAAGAGTGGTTGCGGTGGAGGTAGTAGCTCTGAACTGAGTCAACCGCAACCGCAACCACCGCATCATTTGCTGCGGCAAAATCAAAATCCCAGGAAGCAAAGGAGATGCTGGTCCCCGGAGCTTCATCGGCGTTTTGTTGACGCGCTTCAACAACTTGGAGGAGCTCAAGAGGCCACTCCTAAACAGATTAGAGATCTGATGCAGGTGGAGGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAAAAGTACAGGCTTCACGTTAGAAGATTCCCAATTTCTTCTAATGGCCAAGCTAATAATGGCTTATGGATGGTCCAAGATCAATCTGGAGATAAATCAAAGGGAAGCTTATCACAATCTGGTTCTCCACAAGGTCCTCTTACACCTCTTCTCCTGGGAGGTTCTGTTAAAGGCCTTTCAAGCCCTGGACGAAACAGTGCAGATGCTGAAGATGAGCAATCAGATTGCTGGAATTGGAAAGGTGCTGATAATCAGAGCCTCTAA 1071 0.4706 MDLCLDLSLASSPSLFLGDVSRRSRDMSEKLAMLENYVQRLEDEMNKVEAFKRELPLCMLLVKEAIARLKEEKLQCLGKQDPPAAAAAAAEESTPNCGANGKGPGITMEKDKNNWMSTVQLWCAQTKSKNVEGDRSVPEKPIQLMNPNKTSVGGGFMTFIADSRVPKEVSHVPSFKITPAAQLSHSNSKSGCGGGSSSELSQPQPQPPHHLLRQNQNPRKQRRCWSPELHRRFVDALQQLGGAQEATPKQIRDLMQVEGLTNDEVKSHLQKYRLHVRRFPISSNGQANNGLWMVQDQSGDKSKGSLSQSGSPQGPLTPLLLGGSVKGLSSPGRNSADAEDEQSDCWNWKGADNQSL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0367 356 SUPERFAMILY Homeodomain-like 218 278 IPR009057 -
Lja2g0367 356 Pfam Myb-like DNA-binding domain 222 273 IPR001005 -
Lja2g0367 356 Coils Coil 24 54 - -
Lja2g0367 356 MobiDBLite consensus disorder prediction 285 315 - -
Lja2g0367 356 Gene3D - 219 276 - -
Lja2g0367 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 352 IPR044787 GO:0003700|GO:0006355
Lja2g0367 356 MobiDBLite consensus disorder prediction 129 149 - -
Lja2g0367 356 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 352 - -
Lja2g0367 356 MobiDBLite consensus disorder prediction 180 222 - -
Lja2g0367 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 220 275 IPR006447 GO:0003677
Lja2g0367 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 277 IPR017930 -
Lja2g0367 356 MobiDBLite consensus disorder prediction 285 356 - -
Lja2g0367 356 MobiDBLite consensus disorder prediction 180 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0367 Lja-Chr2 3379224 3381179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0367 1 293 G2-like Transcription Factor Family AT4G37180 41.639 2.18e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja2g0367 Myb_DNA-binding 3.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0367 - - pvu:PHAVU_002G021400g 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0367 2 3379224 3381179 Lja2g0367 2 3379224 3381179 ECH
Lja2g0367 2 3379224 3381179 Lja4g3681 4 68672912 68675916 PCT
Lja4g3309 4 62436989 62439177 Lja2g0367 2 3379224 3381179 PCT