Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0365 ATGAGCTCGGAGGTAGCAAAAATGGAAGAAGAAGAAGATGATTATGAGGAATATATTCCTGTGGCCAAGCGTCGGCTCATGGAAGCTCAGAAGATTCTCCAACGCAAAGGGAAGGCCTCTGCTGTCATTGACGAGGAGTTGGAGAAATTAAGAGTAGCAGCTGAAGCTAAGCCGAGTCTTCTGGTTAAGGCATCACAGTTGAAAAAAGATCAACCCGAGATCAGTGCGACAGAGCAGATTGTTCAACAGGAGAAGGAGATGATTGAAAACTTGTCGGACAGAAAAACCCTTATGTCTGTTCGTGAATTAGCTAAGGGGATCACTTATACAGAACCTTTGCTCACAGGGTGGAAGCCGCCTTTGCATATAAGAAGGATGTCAAAGAAGGAATGTGATTTGATTCGAAAACAGTGGCATATAATAGTTGATGGTGGAGATATCCCGCCTCCAATTAAGAATTTTAAGGATATGAGATTTCCAGAGCCAATTTTGAAGATGTTGAAAACTAAGGGGATTGTGCAACCAACACCTATTCAGGTGCAAGGTCTTCCTGTTATCTTATCAGGGCGGGATATGATTGGGATTGCTTTCACGGGTTCTGGAAAAACTCTGGTCTTTGTGCTGCCAATGATCATGGTGGCAATGCAGGAGGAAATTATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTAATTATTTGCCCATCAAGAGAACTGGCTAGGCAAACTTTTGATGTGGTTGAAGAGTTCTTGATACCTATGAAGGAAGCTGGATATCCAGAGATCAGACCCTTGCTTTGTATTGGTGGAGTGGATATGAGATCACAGCTTGAGATCGTGAAGAAAGGTGTTCACATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACATTAGATGAGGCTGATCGATTGGTGGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGACCATTTTAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCCACTATGCCAACCAAAATCCAGAACTTTGCTAGAAGCGCTTTGGTAAAACCTATCATGGTCAATGTGGGACGTGCAGGGGCAGCCAATCTGGATGTAATTCAGGAGGTAGAGTATGTTAAACAAGAGGCAAAGATAGTTTACCTACTTGAGTGCCTACAAAAAACCCCACCTCCTGTTCTAATATTCTGTGAGAACAAGGCTGATGTCGATGACATTCATGAATATCTTCTGTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACCGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATCAACTATGACATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGAAGGACTGGAAGATGTGGCAAAACTGGGATAGCAACAACATTCATCAACAAGAATCAATCTCCCACAACATTACTTGATTTAAAGCACCTCTTGCAAGAAGCAAAGCAAAGGATTCCCCCAGTTTTGGCCGAGCTGAGTGATCCAATGGAAGACAATGAAGCAATCACAGACATAAGTGGGGTCAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGTGATTGTCCCAAATTAGAACATCAGAAGAGCATGGCAATTGCAAACAATAGACATGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA 1794 0.4242 MSSEVAKMEEEEDDYEEYIPVAKRRLMEAQKILQRKGKASAVIDEELEKLRVAAEAKPSLLVKASQLKKDQPEISATEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLHIRRMSKKECDLIRKQWHIIVDGGDIPPPIKNFKDMRFPEPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTFDVVEEFLIPMKEAGYPEIRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIMVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSPTTLLDLKHLLQEAKQRIPPVLAELSDPMEDNEAITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRHDYFGSGGYRGEI* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0365 597 SUPERFAMILY Retrovirus zinc finger-like domains 555 576 IPR036875 GO:0003676|GO:0008270
Lja2g0365 597 PANTHER BNAA06G38640D PROTEIN 16 577 - -
Lja2g0365 597 SMART ultradead3 171 382 IPR014001 -
Lja2g0365 597 Gene3D - 377 539 IPR027417 -
Lja2g0365 597 CDD DEADc_DDX41 163 368 IPR044113 GO:0000398|GO:0003724|GO:0005524
Lja2g0365 597 Pfam Zinc knuckle 555 571 IPR001878 GO:0003676|GO:0008270
Lja2g0365 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Lja2g0365 597 Pfam Helicase conserved C-terminal domain 391 498 IPR001650 -
Lja2g0365 597 SMART helicmild6 417 498 IPR001650 -
Lja2g0365 597 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 16 577 - -
Lja2g0365 597 CDD SF2_C_DEAD 379 507 - -
Lja2g0365 597 Pfam DEAD/DEAH box helicase 176 355 IPR011545 GO:0003676|GO:0005524
Lja2g0365 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 511 IPR027417 -
Lja2g0365 597 Coils Coil 74 94 - -
Lja2g0365 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 378 538 IPR001650 -
Lja2g0365 597 SMART c2hcfinal6 555 571 IPR001878 GO:0003676|GO:0008270
Lja2g0365 597 Gene3D - 120 371 IPR027417 -
Lja2g0365 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 367 IPR014001 -
Lja2g0365 597 ProSiteProfiles Zinc finger CCHC-type profile. 556 571 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0365 Lja-Chr2 3369909 3373054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0365 140 537 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 5.03e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0365 K13116 - gmx:100814127 1110.52