Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0363 ATGTCGTCGTCGTCGTCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTGCGGCGGAAGTGCACGCAAGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAGAGGTTTGCTTATGTGCACAAGGTTTTCGGTGCCAGCAACGTGGCGAAGCTGCTGAACGAGCTCAACGCGGCGCAGCGAGACGACGCGGTGAAGTCCCTGGCGTATGAAGCGGAGGCGCGGCTGAGGGACCCTGTGTACGGTTGCGTTGGACTCATCTCCGTTCTTCAGCACAAGCTCAGGCAAATCCAGGTGGAGCTCAACACTGCCAAGAAGGAGCTCGCTACGTATATTGGACCTCAGGCACTGCAGGGCTTGCCGGCGCCGATTCTCCAGCAGCAGCACACCAGCCACCCGTTTTCGTCTTCACTTTACCCTTACAGCGGTAACATCACGGCGGCGACGGCGCAGATGGTGATTCGCGATCCTCAGCCGCCGCCGCCGCAGCAGCATCAGATCTTGGAAGCTCAGCAGTTGGCAGCGGCGGTGGCTGCGAGAGAGCAGCAGGAGATGTTTCGGAGTTACGAGCAGCAGCATCAGCAGCAAGAGTTTCTGAGGTTCAGTGGCGGGTTTGATGTGGGTTCCGGTGGTTCTCCCGGCGGTTTCAGCCAGGTCTCACCAACTCCGGCTGTTGATCAGTTGTCTCCTTCGTTGGCTTTGGGTTCCTTCGACAACACTTTCACTCTACAGCAGCAACCACAGCAAGGAGAACCTCATTCACACCCTCACCATCTCTCACTTCAGGCACAGCTTTTACTCCCTCCGCAGCAGAAGCAGGTGCAGCCGCAAACCCAGCAGTCACAACTGACCCACCATCACCACCACCAGCAACAACCGGAAAGCGAGGAATGTAGGAGTGTGGGTCCATCCTGTTGA 927 0.5836 MSSSSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNTAKKELATYIGPQALQGLPAPILQQQHTSHPFSSSLYPYSGNITAATAQMVIRDPQPPPPQQHQILEAQQLAAAVAAREQQEMFRSYEQQHQQQEFLRFSGGFDVGSGGSPGGFSQVSPTPAVDQLSPSLALGSFDNTFTLQQQPQQGEPHSHPHHLSLQAQLLLPPQQKQVQPQTQQSQLTHHHHHQQQPESEECRSVGPSC* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0363 308 MobiDBLite consensus disorder prediction 268 308 - -
Lja2g0363 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 275 - -
Lja2g0363 308 MobiDBLite consensus disorder prediction 205 233 - -
Lja2g0363 308 Coils Coil 90 110 - -
Lja2g0363 308 MobiDBLite consensus disorder prediction 268 289 - -
Lja2g0363 308 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Lja2g0363 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 6 275 - -
Lja2g0363 308 MobiDBLite consensus disorder prediction 216 233 - -
Lja2g0363 308 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0363 Lja-Chr2 3356113 3358818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0363 6 223 AS2 family AT5G66870 58.898 8.20e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja2g0363 LOB 7.2e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0363 2 3356113 3358818 Lja4g3311 4 62552841 62555162 PCT
Lja4g3310 4 62503624 62504556 Lja2g0363 2 3356113 3358818 PCT