Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0341 ATGTCACAGCGATCGGTGCCGGCGCCGTTCTTGACGAAAACGTATGAGATGGTGGACGATCCGGCGACGGAGGATGTGATTTCATGGAGCGAGAGCGGCAACACCTTCGTCGTGTGGAAGCATGCGGATTTTGCTAAGGATTTGCTTCCCAGTTACTTCAAGCATAACAATTTCTCCAGCTTTGTGCGTCAGCTCAATACCTATGGTTTCAGGAAGATCGTACCAGACAAATGGGAATTCGCGAATGAGAATTTCAAGCGAGGGAAGAGAGAGCTACTCTCCGAGATCAAACGGCGCAAGACGGTGGTGGCGCAACCGTCAGCGCAGGCTCCGGAGGTTGGTAAATCCGGAAACTCGACTTCGAATTCCGGCGGTGATGAAGTGGGGTCCAGCTCGACGTCGACGTCTTCGCCGGGTTCAAAGAACCCGGGATCGGTGGAGACAACGACCGCTCCTCCTAATACTCTTCCTCCGGCAACCCTTCAGTGCGCGAATTTATCGAGTGAGAACGAGAAATTGAAGAAGGAGAATGAAACTTTGGGGTGGGAGCTGGCACGTGCGAAGAAGCAGTGTGAAGAGTTGGTGGGTTTTCTGAGGGAGCGTTTGAAGGTGGGACCCGATCAGATCGAGCGTATAATGCGGAAAGGGAGTTATGGATCTGATGAAAATAACGCGGTAGGTGAGGGAAAATGTGAAGGTGAAGGAGAGTGTTTGAAACTGTTTGGGGTTTGGTTGAAAGAAAAGAGTTTTTGTGAAAAAAGAAACAATAAGAGAGAGCGTGAAGACCAAATGGGCTTTGGTGGGCCTCCAATACCTGCTAAGGTTTCAAAGACTACTACTGTTGTTGATTTTGGTGCTGTGAATGTGAAAGCAGTGATGAATAGTAGTAGCAAGGTTTGCAGCTGA 906 0.4967 MSQRSVPAPFLTKTYEMVDDPATEDVISWSESGNTFVVWKHADFAKDLLPSYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGKRELLSEIKRRKTVVAQPSAQAPEVGKSGNSTSNSGGDEVGSSSTSTSSPGSKNPGSVETTTAPPNTLPPATLQCANLSSENEKLKKENETLGWELARAKKQCEELVGFLRERLKVGPDQIERIMRKGSYGSDENNAVGEGKCEGEGECLKLFGVWLKEKSFCEKRNNKREREDQMGFGGPPIPAKVSKTTTVVDFGAVNVKAVMNSSSKVCS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0341 301 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0341 301 Coils Coil 163 190 - -
Lja2g0341 301 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0341 301 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 290 - -
Lja2g0341 301 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0341 301 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0341 301 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0341 301 MobiDBLite consensus disorder prediction 102 160 - -
Lja2g0341 301 Gene3D - 2 101 IPR036388 -
Lja2g0341 301 MobiDBLite consensus disorder prediction 111 160 - -
Lja2g0341 301 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 290 IPR027725 -
Lja2g0341 301 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Lja2g0341 301 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0341 Lja-Chr2 3122212 3124319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0341 2 301 HSF AT4G36990 50.000 7.62e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja2g0341 HSF_DNA-bind 1.5e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0341 K09419 - gmx:100791543 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0341 2 3122212 3124319 Lja2g0341 2 3122212 3124319 ECH
Lja2g0341 2 3122212 3124319 Lja4g3339 4 63108652 63111935 PCT