Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0335 ATGGAGCAGCAGCGGAAGCTCGTGGTTTTGGGTATTCCATGGGACGTGAATACTGAGGGTTTGAAGGAATATATGAGCAAATTTGGTGAATTGGAAGATTGCATTGTTATGAAGGAGCGGTCAACCGGAAGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCATTGGATGATGTTAAGGAAGTATTATCAAGTGAACATATGCTGGGTAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCGGCCAAAAAAGTTAACAGAATATTTGTGGCCCGGATTCCACTATCAGTAACAGAACCAACTTTTAGAAGTTATTTTGAGAAGTATGGTGAGATAACAGATTTGTACATGCCAAAGGATCAAGGGTCAAAGATGCATCGTGGAATTGGTTTTGTCACTTTCGCAAATGCAGAATCTGTGGAGAGTTTGATGTCAGAAACCCATGAACTGGGAGGTTCTACTGTGGTGGTTGATCGAGCCACCCCTAAGGATGATGACTTCAAGCCAGTTGGCAGAATGTCACAGGGAGGATATGGCGCATATAATTCTTATATTTCTACCGCAACTAGATATGCAGCGCTGGGTGCTCCTACTTTGTATGACCATCCAGGCCCTATTTATGGAAGAGGTGAGCCTGCTCGCAGAATTAGTAAAAAGATTTTTGTCGGCCGTCTTCCCCCAGAAGCAACTGTGGAAGATCTTCGTCAATATTTTGCAAGATTTGGCCATATATTAGATGTTTATATTCCCAAAGATCCTAAGAGAGCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGAAGGTGTTGCAGACCGTGTCTCTCGAAGGCCTCATGAGATTTGTGGTCAAGAGGTGGCAATAGATTCAGCCACTCCTGTTGATGAGGCTGGGCCCAGTGGGAACTTTATGATGAATAGCGTGGATTCTTTTGGTGGGGGATACGGCGGTCCTTTGCGATCTTATGGGAGGATGTATGGTAGCTTAGACTTTGATGATTGGGGTTATGGAGCTCCCAGTGGGAGACCATCAAGAGCGGATTGGAGGTATAGGCCATACTAG 1086 0.4475 MEQQRKLVVLGIPWDVNTEGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASLDDVKEVLSSEHMLGNRMLEVKVATPKEEMRAPAKKVNRIFVARIPLSVTEPTFRSYFEKYGEITDLYMPKDQGSKMHRGIGFVTFANAESVESLMSETHELGGSTVVVDRATPKDDDFKPVGRMSQGGYGAYNSYISTATRYAALGAPTLYDHPGPIYGRGEPARRISKKIFVGRLPPEATVEDLRQYFARFGHILDVYIPKDPKRAGHRGFGFVTFAEEGVADRVSRRPHEICGQEVAIDSATPVDEAGPSGNFMMNSVDSFGGGYGGPLRSYGRMYGSLDFDDWGYGAPSGRPSRADWRYRPY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0335 361 SUPERFAMILY RNA-binding domain, RBD 90 190 IPR035979 GO:0003676
Lja2g0335 361 SUPERFAMILY RNA-binding domain, RBD 224 325 IPR035979 GO:0003676
Lja2g0335 361 Gene3D - 88 175 IPR012677 -
Lja2g0335 361 Gene3D - 1 87 IPR012677 -
Lja2g0335 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Lja2g0335 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 68 IPR000504 GO:0003723
Lja2g0335 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 281 IPR000504 GO:0003723
Lja2g0335 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 153 IPR000504 GO:0003723
Lja2g0335 361 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 361 - -
Lja2g0335 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 81 IPR000504 GO:0003723
Lja2g0335 361 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Lja2g0335 361 PANTHER OS01G0945800 PROTEIN 4 361 - -
Lja2g0335 361 CDD RRM2_TDP43 225 300 - -
Lja2g0335 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 301 IPR000504 GO:0003723
Lja2g0335 361 Gene3D - 221 305 IPR012677 -
Lja2g0335 361 SMART rrm1_1 6 77 IPR000504 GO:0003723
Lja2g0335 361 SMART rrm1_1 94 165 IPR000504 GO:0003723
Lja2g0335 361 SMART rrm1_1 226 297 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0335 Lja-Chr2 3016642 3021662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0335 7 278 Eukaryotic Initiation Factors Gene Family AT2G36660 24.286 8.37e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0335 K14411 - gmx:100795240 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0335 2 3016642 3021662 Lja2g0335 2 3016642 3021662 ECH