Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0333 ATGGACATTGATATATTCAAAACCTCTGCGAATGATGGTAGCAGCATGGACATGATGGTAATGATGGAAAAGTTCCCTGAATTATGTGAACCTTTTTATAACACACTCAACTTTGACTCAAATGTAACTACGCCTTCTTTGATTAACCCACCACCACCTTCATCTGCTAATTTCATCAACAACATTCCTCTGCAACAACACATGACTCTGCCTTTTCAATCCAACGAGAAGAAAAATTCTATGGCCGCTATGAGAGAGATGATTTTTCGAGTAGCAGTGATGCAGCCTGTTCAAATAGACCCGGAGTCCATCAAGCCACCAAAGAGGAAGAATGTGAAGATTTCCAAGGATCCTCAGAGCGTGGCGGCGAGGCATAGAAGGGAAAGGATAAGCGAGAGGATAAGGATCCTGCAGAGATTAGTCCCTGGAGGAACGAAAATGGACACGGCTTCTATGTTGGATGAAGCTATACATTACATGAAGTTCTTGAAGAAACAAGTGCAGACTCTGCAGCAGGCAGGGACAAGTAGAAACTTCCAAGGAGTGTCTAACGCCAGTGTCAATTATTCTGCTGCTTTGATGAGGGGTTGCTAG 594 0.436 MDIDIFKTSANDGSSMDMMVMMEKFPELCEPFYNTLNFDSNVTTPSLINPPPPSSANFINNIPLQQHMTLPFQSNEKKNSMAAMREMIFRVAVMQPVQIDPESIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYMKFLKKQVQTLQQAGTSRNFQGVSNASVNYSAALMRGC* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0333 197 Pfam Helix-loop-helix DNA-binding domain 124 163 IPR011598 GO:0046983
Lja2g0333 197 Gene3D - 113 181 IPR036638 GO:0046983
Lja2g0333 197 PANTHER TRANSCRIPTION FACTOR HEC2 41 194 - -
Lja2g0333 197 SMART finulus 120 169 IPR011598 GO:0046983
Lja2g0333 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 175 IPR036638 GO:0046983
Lja2g0333 197 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 41 194 IPR045843 GO:0003700|GO:0006355
Lja2g0333 197 Coils Coil 153 173 - -
Lja2g0333 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0333 Lja-Chr2 3002495 3003088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0333 22 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 58.046 1.10e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0333 HLH 6.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0333 - - gmx:100805427 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0333 2 3002495 3003088 Lja2g0333 2 3002495 3003088 ECH