Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0331 ATGGACTGGATTCGCGGACACTCACTTGGCAGCGGAAGCTTTGCCACCGTCAATTTAGCCATACCTACAAACTCTTCCTCGCAGTTCCGGTCTCCCACCGCCGTCAAATCCTCCGAGGTTGACTTTTCGTCTTTGCTTCAAAACGAGGAACAAGTACTCAATCGCCTAGGATCATGCCCGCAAATCATCAAGTGTTTTGGCCACGACCAAACCGTAGAAAATGGCGAAGAGTACTATAATCTATTTCTTGAATATGCTGCCCGTGGAACTCTTTCTGATCAGCTGAAGAATCATGGTGGCCGGTTACCTGAAACCCTCGTACGCCGATACACAAGGTCCATACTCGAAGGTCTTAAGCATGTACACGCAGAGGGGTTCGTCCACTGTGACATCAAGCTGCAAAACATTCTTGTTTTTGACAATGAGGTTAAGATTGCGGATTTTGGGCTAGCAAAGGAAACAGGGGAGCAGAAACAGAGCACCAAGTGGGATTGCAGGGGAACTCCCTTGTTTATGTCGCCGGAATCAGTGAACGACAGTGAGTACGAGTCTCCCGGTGATATATGGGCTCTCGGCTGCGCCGTGGTTGAGATGGTGACCGGAAAGCCGGCGTGGAATGTGCTAAGCGGGGCAAATATATGGTCATTGTTGATTCGAATTGGGGTCGGAGACGAGTTGCCGTTGATTCCTGAGGAATTGTCAAAGGAGGGTAAGGATTTTCTGGAGAAGTGTTTTGTTAAGGATCCGAGGAAGCGATGGAGTGCAGAGATGCTTTTGAAGCACCCTTTCATCATTGAAGTAGCAGATGATACTGCTTCATTGCCATTGGAGCCAGTGAAAGAGTTATTACTATCTTTATCGCCAAGAAACCACTTTGAACTTTTTGATTGGGCTTCCACTGTGAAGAGTTCAGTTACAACTTCACCGGATTCCGATGAATGGAGCAGAGAATCTTGTTTATGTTCGTCAGGGGAGAGGCTCCGACGGCTGGTGACGGATCAGAGGCCAACAGATTGGTCAGAATCGGGTAGCTGGACTGTTGTTAGGAGTAGTTAG 1056 0.483 MDWIRGHSLGSGSFATVNLAIPTNSSSQFRSPTAVKSSEVDFSSLLQNEEQVLNRLGSCPQIIKCFGHDQTVENGEEYYNLFLEYAARGTLSDQLKNHGGRLPETLVRRYTRSILEGLKHVHAEGFVHCDIKLQNILVFDNEVKIADFGLAKETGEQKQSTKWDCRGTPLFMSPESVNDSEYESPGDIWALGCAVVEMVTGKPAWNVLSGANIWSLLIRIGVGDELPLIPEELSKEGKDFLEKCFVKDPRKRWSAEMLLKHPFIIEVADDTASLPLEPVKELLLSLSPRNHFELFDWASTVKSSVTTSPDSDEWSRESCLCSSGERLRRLVTDQRPTDWSESGSWTVVRSS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0331 351 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0331 351 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 314 - -
Lja2g0331 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lja2g0331 351 CDD STKc_MAPKKK 2 264 - -
Lja2g0331 351 Gene3D Transferase(Phosphotransferase) domain 1 2 304 - -
Lja2g0331 351 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 314 - -
Lja2g0331 351 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0331 351 SUPERFAMILY Protein kinase-like (PK-like) 3 302 IPR011009 -
Lja2g0331 351 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Lja2g0331 351 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0331 Lja-Chr2 2985045 2986386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0331 1 349 MAP Kinase Kinase Kinase AT5G67080 52.925 1.74e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja2g0331 Pkinase 5.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0331 - - gmx:100797177 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0331 2 2985045 2986386 Lja2g0331 2 2985045 2986386 ECH
Lja2g0331 2 2985045 2986386 Lja4g3348 4 63257817 63259227 PCT