Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0330 ATGAACTGGGTTCGTGGACGCTCGCTTGGTAGTGGAAGCTTCGCCTCCGTCAATTTAGCCAAACCCAAAAAAACTTCCACTCTTTTTCACTCTCCCACCGCCGTCAAGACATCCAATGTGAACTCCTCGTCTTCGCTCAAAAACGAGGAACAGATACTCCATTGCCTAGGATCGTGCCCGCAAATTGTCAAGTGTTTTGGCCACGATCAAACCGTGGAAAACGGGGAAGAGTACTACAATCTTTTTCTTGAGTATGCTGCCGGTGGCACTCTTGCTGATCAGCTGAAGAATCACAGTGGTCGCCGTTTCCCCGAAACCCTCGTTCGCCGATATGCAAGGTCCATCCTCGAAGGGCTCCACCATGTTCACTCGAAGGGGTTCGTTCACTGCGACATCAAGCTTCAGAACATACTTGTTTTCGACAATGGTGATGTTAAGATTGCGGATTTCGGGCTTGCCAAAGAGAAAGGGGAGATACATAGTACAACGTGGGAGTGCAGGGGAACTCCCTTGTTTCTATCACCGGAAGCCGTGAATGACAGTGAGTATGAGCCACCAGCGGATATATGGGCTTTGGGTTGCGCCGTCGTGGAGATGGTGACAGGAAAGCCTGCATGGAACGTGGATAGCGGGACAAATACATGGTTTTTGTTAGTTCAAATTGGGATGGGAGAAGAGTTGCCACAAATTCCAGATGAATTGTCGAAACATGGGAAGGATTTTCTTGAGAAGTGTTTTATTAAGGATCCAAAGAAGAGGTGGAGTGCAGAGATGCTTCTGGGGCACCCTTTTATTGCAGATGATATTGTTCCATTGGAGCAAGTGAAGGAGAAGGAGCCATTGCCATGTCCATCTCCAAGAACTCATTTTGATTGGGTTTCCACCGTGACGACAACTTCAGTTCCTGCTACACCAAATTCTGGTGAATGGAAATGTTCACCGGCAGACCGGCTTCAGCGGCTGGTCGGGGATCAAGTTCCAACAGATTGGTTTGAATCAGAAAGCTGGACTATTGTTAGATCAAGTTAG 1029 0.481 MNWVRGRSLGSGSFASVNLAKPKKTSTLFHSPTAVKTSNVNSSSSLKNEEQILHCLGSCPQIVKCFGHDQTVENGEEYYNLFLEYAAGGTLADQLKNHSGRRFPETLVRRYARSILEGLHHVHSKGFVHCDIKLQNILVFDNGDVKIADFGLAKEKGEIHSTTWECRGTPLFLSPEAVNDSEYEPPADIWALGCAVVEMVTGKPAWNVDSGTNTWFLLVQIGMGEELPQIPDELSKHGKDFLEKCFIKDPKKRWSAEMLLGHPFIADDIVPLEQVKEKEPLPCPSPRTHFDWVSTVTTTSVPATPNSGEWKCSPADRLQRLVGDQVPTDWFESESWTIVRSS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0330 342 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 301 - -
Lja2g0330 342 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0330 342 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0330 342 Gene3D Transferase(Phosphotransferase) domain 1 2 301 - -
Lja2g0330 342 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 301 - -
Lja2g0330 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Lja2g0330 342 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Lja2g0330 342 Pfam Protein kinase domain 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0330 342 CDD STKc_MAPKKK 2 265 - -
Lja2g0330 342 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0330 Lja-Chr2 2981074 2982116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0330 1 340 MAP Kinase Kinase Kinase AT4G36950 51.304 1.18e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja2g0330 Pkinase 2.5e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0330 - - gmx:100797177 476.478