Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0327 ATGGCTGATGATGAAGCTTCCAGGAAGCGAAGGACCACCAGAGGCCCCGAAGCCACCGCCCGCAGCCAAGCCTTGGAGCTCCTTAAAGCCTGCCGTGGCGGTGGCCGCAGATCTGACCTCGCCGGACCCCAAATCAAGTTAGAAAACCCTATCTACGACACCGTCCCCGAAGACGAGTACAACGCCCTCCCCCTCGCCGCCAAGCGCCGCGAGCAAGCGCAAGATTTCATCGTCGATGATGATGGCCTCGGTTACACCCTCTCCTCTGAAGACGAATCCGATGGTGAAAATCTGGAGAATCCCAAGTGGAAGAAGGATCACCAACCTAAACGGCCTTCTGTTTCTTCATCATCACTCTCCGCCGCCGCAGCCGGCACGCAGAGGCTGTCGTCCATGTTCACTTCCTCGAATTTCAAGAAGAAAAGGGACGACAAGGCCAGCGAGAGCATCGTTGATGACGTTATTGCAGAGTTCGCACCGGATGAGAACGATAGGCTGAGGCGCAGAAGGGCTAAGCCATCTGCTGATTCTATTAGGGCTTCTTTGGTGTCTGGAAATTTTGCAATTGACAATGCCGAGCTAATTAGGGCTATTGAGAGCAAAGGTTGTGACTCGGGTTTAAAGCAAAAGTGCGAAAAAGAAGTAGAAGTGAATGTAAGTTCTGAAAATGTTCAGGCGCCACCACCCCTAAGTAGTGAGGGTTTGAGTGAGGATAGTGTGGTGAAGGATATTGAGATGGAAGAACGACCAGCTCCGAAAAAGGAGGTTTTCACTTTGAATGCGAAAGTTACACGAGAGGAGGATTCGGCCGCGTTGAGTGCTACTGCCGGTTGGCAGGAGGCAAAGAGTAATGCTGGAGGAGGGGAGATCAATGCTGCTGTTTCGAAGGATGATTTGTCCGCAGAATTGAGTTTAGAGGCAGATGGATCGCTGCCATTTTACATACTAGATGCCCATGAGGAGTTTTATGGAGCCAATATGGGAACCATTTATTTGTTTGGGAAGGTGAAAACAGGGGATTTGTATCAGAGTTGCTGTGTTGTTGTGAGGAACATGCAGAGATGTGTCTACGCAATCCCTAGCCGTCCTTTGCATTACACTGATGAGATAATGAATCTTGAGAAACAAGTCCAAGAGTCTCGAATTTCTCCTGCAGATTTCCATAAAAAACTGCAAGATTCTGTATCTGATATAAAGAATGAGATAGCAAGACATCTTGTGGATCTGAACGTTTCTACCTTTACCATGGTGCCGGTTAAGAGAAAATATGCATTTGCACGAACTGATATTCCAACTGGTGAAAATTATGTGGTGAAAATAAATTATCCGTTCAAGGATTCAGTACTTCCTGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTTTTAGGGACTCATTGCAGGGCACTCGAGCTTTTTTTGATTAAAAGAAAGATAAAAGGGCCTTCATGGCTACAGGTTTCAAACTTTTCTACACGCTCAGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAAGACATAAGGATTTCTCCACCTTCCTTAAAAATCACTTGCGAGATACCTCCTGTTGTTGTCGCGGCGATAAACTTGAAAACCACCTATGAAAAGCAGAACATAAATGAAATTGTATCCGCATCCGTTGTCTGTTGCCATATGGTCAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAAAGTCCTGGAAAGCTTACCCATTTTACTGTTATTCGTCAACTTGATGGAAATGGATTTCCTCTGGGATTCAATAAGGAGGTTAGGGACAGAAACACAAAAGCAGGGTCCAATGTTGTGTATCTTAAAAACAGTGAAAGTGCTTTGTTAGATTGTCTGATGTTAGAATTACACAAGTTGGATAGTGATGTCCTTGTTGGACATAATATTTCTGGACTTGACCTGGATGTCCTTCTCCACAGATCCCAGGCTTGCAAAGTACCGAGCAGCAAGTGGTCTAAATTAGGTCGTCTCAACCGTTCTACGATGCCTAAGCTTTACAGAAGAAGAAAAACCTTTGGTTTTGGAGTTGATCCTGGTATCATGTCTTGTATTGCTGGTCGGCTTCTTTGTGATACCCATCTGAGTTCCCGTGATCTATTAAAGGAGGTTAGTTATTCCCTAACTCAGCTTGCAAAAACACAGCTGAACAAGTTTCGGAAGGAAGTTGCTCCACTTGGCATTCCAAAAATGTTCCAAACAGCAGAGTCCCTAATGGAGCTTATTGAACACGGTGAAACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAATATTCTTCCGCTCACACGTCAGCTGGCTAATATAAGTGGTAATCTGTGGGGAAAAACTCTTCAGGGCGCTCGTGCACAAAGTGTGGAGTATCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGTTTTCAAATCATGCAAAAGAAACAAAATTGACAAAACGCAGAGTAACTCACGGTGTTGATGATGGCAACTTTGATGAAGCAGATATTGATGATGGAATTGGAAACTACCATAACGATGCTTCTGAAAGTATTCAGAAGAAAAGCAAGAAGGCTTCTTCCTATGCCGGGGGGCTGGTTTTAGAGCCAAAGAAGGGTCTTTATGACAAATATATATTGCTTCTGGACTTTAATAGCCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACCGTTGAAAGATCTTTGGATGGATCTTTTCCTTGTCTACCTTCTAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTGGAAAATCTGGTTGAAAGGAGGAAAATGGTAAAGTCATGGATGAAGGCTGCATCTGGTCTTTATTATCAGCAACTGGAAATTCGGCAACAAGCACTGAAGCTTACTGCAAACAGTATGTATGGTTGCCTGGGATTTTCCAATTCCAGATTTTATGCAAAGCCACTAGCTGAGCTCATAACCCTACAAGGAAGGGAGATATTGCAGAGTACTGTTGATCTAGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGGGAAAGCAAAGGCATTAGCTGGAAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTCCTTCTTAAGAAAAAGAAGTATGCTGCTCTAAAGGTGCAGTTTAAAGATGGAAGTACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTGGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGTGAAGATGTGGTTGAATCAATTCACAGCTCTCTCATGAAGGTGCAAGAGGAGATGAAGAACGGTCAAGTACCATTGGAAAAATATGTCATCACAAAGACATTGAATAGTCCTGATGCCAAAAGCCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAGCAAGGTTACTCCTCTGGTTGCTCTATTGGTGATACCATCCCTTATGTAATTTGCTATGAGCAGGGTGGTAGTTCAGGCAGTGCAACGGGTATTGCTCAACGTGCCAGACATCCTGACGAACTAAAACAAGAACAGGGGACATGGCTAATTGACATTGATTACTATTTATCACAGCAGATTCATCCCGTGGTATCACGTCTTTGTGCACCAATTCAGGGCACAAGCCCAGAAAGACTGGCTGAGTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGCGAAGCTTCAAGTGTTGATCTTACAAGCTCACTCATGTTTGCTGCTGATGACCAGGAGAGGTATCGGGGATGTGAGCCGTTGGTCTTGTCATGCCCCAGCTGCTCTGGTACTATTGACTGCCCACATGTGTTAAAATCCAGTGAAAAGCCATCCAGTTCAGGCACGGAGGAATCTGACTATAATTTTTGGCGTAAGCTTTGCTGTCCTAAATGCCAAGAAAATGGGGGTGGTAGAATTTCTCCTGCAATGATCGCCAATCAGGTCAAAAGACAAGCAGAGAAATTTGTTTTAATGTATTATAGAGGTTCATTAATGTGCGACGACGAGACGTGTAAGCACACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGAAAGCGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGACTCTACAGAAAGTACACTGAAGCAGACTTGTACAAGCAACTCTCATATTTCTGCCATGTATTCGACACTGTTAGTTGTATAGATAAGTTGGAGGCAAAATCTAGGATAACGGTAGAGAAAGAGTTGATCAAAATTAGGCCGATAGTTGATCCAATAGCATCAACAGTACAGAAGATCAGGGACCGTTGTGCCTATGGTTGGGTGAAGTTGGAGGACCTGACCATTACAGCATAA 4470 0.4362 MADDEASRKRRTTRGPEATARSQALELLKACRGGGRRSDLAGPQIKLENPIYDTVPEDEYNALPLAAKRREQAQDFIVDDDGLGYTLSSEDESDGENLENPKWKKDHQPKRPSVSSSSLSAAAAGTQRLSSMFTSSNFKKKRDDKASESIVDDVIAEFAPDENDRLRRRRAKPSADSIRASLVSGNFAIDNAELIRAIESKGCDSGLKQKCEKEVEVNVSSENVQAPPPLSSEGLSEDSVVKDIEMEERPAPKKEVFTLNAKVTREEDSAALSATAGWQEAKSNAGGGEINAAVSKDDLSAELSLEADGSLPFYILDAHEEFYGANMGTIYLFGKVKTGDLYQSCCVVVRNMQRCVYAIPSRPLHYTDEIMNLEKQVQESRISPADFHKKLQDSVSDIKNEIARHLVDLNVSTFTMVPVKRKYAFARTDIPTGENYVVKINYPFKDSVLPVDLKGESFCALLGTHCRALELFLIKRKIKGPSWLQVSNFSTRSASQRVSWCKFEVTVDSPKDIRISPPSLKITCEIPPVVVAAINLKTTYEKQNINEIVSASVVCCHMVKIDTPMLASEWKSPGKLTHFTVIRQLDGNGFPLGFNKEVRDRNTKAGSNVVYLKNSESALLDCLMLELHKLDSDVLVGHNISGLDLDVLLHRSQACKVPSSKWSKLGRLNRSTMPKLYRRRKTFGFGVDPGIMSCIAGRLLCDTHLSSRDLLKEVSYSLTQLAKTQLNKFRKEVAPLGIPKMFQTAESLMELIEHGETDAWLSMELMFHLNILPLTRQLANISGNLWGKTLQGARAQSVEYLLLHAFHAKKYIVPDKFSNHAKETKLTKRRVTHGVDDGNFDEADIDDGIGNYHNDASESIQKKSKKASSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPCLPSSKTTGVLPELLENLVERRKMVKSWMKAASGLYYQQLEIRQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIGKAKALAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAALKVQFKDGSTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKVQEEMKNGQVPLEKYVITKTLNSPDAKSQPHVLVAQRLKQQGYSSGCSIGDTIPYVICYEQGGSSGSATGIAQRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCAPIQGTSPERLAECLGLDTSKFQHKSSEASSVDLTSSLMFAADDQERYRGCEPLVLSCPSCSGTIDCPHVLKSSEKPSSSGTEESDYNFWRKLCCPKCQENGGGRISPAMIANQVKRQAEKFVLMYYRGSLMCDDETCKHTTRSISLRLVGDSESGTVCPNYPRCNGRLYRKYTEADLYKQLSYFCHVFDTVSCIDKLEAKSRITVEKELIKIRPIVDPIASTVQKIRDRCAYGWVKLEDLTITA* 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0327 1489 Pfam DNA polymerase family B 786 1247 IPR006134 GO:0000166|GO:0003677
Lja2g0327 1489 Gene3D - 313 512 - -
Lja2g0327 1489 SMART polmehr3 527 1030 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja2g0327 1489 MobiDBLite consensus disorder prediction 112 126 - -
Lja2g0327 1489 Pfam DNA polymerase family B, exonuclease domain 343 719 IPR006133 -
Lja2g0327 1489 Gene3D DNA Polymerase alpha, zinc finger 1285 1474 IPR038256 -
Lja2g0327 1489 MobiDBLite consensus disorder prediction 95 111 - -
Lja2g0327 1489 PANTHER DNA POLYMERASE 279 1487 - -
Lja2g0327 1489 TIGRFAM pol2: DNA polymerase (pol2) 309 1244 - -
Lja2g0327 1489 MobiDBLite consensus disorder prediction 1 22 - -
Lja2g0327 1489 Pfam DNA Polymerase alpha zinc finger 1286 1485 IPR015088 GO:0003887|GO:0006260
Lja2g0327 1489 Gene3D Helix hairpin bin 933 976 - -
Lja2g0327 1489 PRINTS DNA-directed DNA-polymerase family B signature 963 975 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja2g0327 1489 PRINTS DNA-directed DNA-polymerase family B signature 1016 1024 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja2g0327 1489 PRINTS DNA-directed DNA-polymerase family B signature 887 900 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lja2g0327 1489 CDD POLBc_alpha 862 1262 IPR045846 GO:0003887|GO:1902975
Lja2g0327 1489 Gene3D - 527 839 IPR036397 GO:0003676
Lja2g0327 1489 CDD DNA_polB_alpha_exo 527 777 - -
Lja2g0327 1489 MobiDBLite consensus disorder prediction 1 16 - -
Lja2g0327 1489 Pfam DNA polymerase alpha subunit p180 N terminal 25 93 IPR024647 -
Lja2g0327 1489 MobiDBLite consensus disorder prediction 80 126 - -
Lja2g0327 1489 Gene3D Palm domain of DNA polymerase 856 1081 IPR023211 -
Lja2g0327 1489 Gene3D - 353 479 - -
Lja2g0327 1489 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 279 1487 - -
Lja2g0327 1489 ProSitePatterns DNA polymerase family B signature. 1018 1026 IPR017964 GO:0000166|GO:0003676
Lja2g0327 1489 Gene3D - 1095 1275 IPR042087 -
Lja2g0327 1489 SUPERFAMILY Ribonuclease H-like 308 814 IPR012337 -
Lja2g0327 1489 SUPERFAMILY DNA/RNA polymerases 810 1261 IPR043502 -
Lja2g0327 1489 Coils Coil 1044 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0327 Lja-Chr2 2946537 2958732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0327 2 1487 Core DNA Replication Machinery Family AT5G67100 59.779 0.0 1753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0327 K02320 - gmx:100798779 2145.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0327 2 2946537 2958732 Lja2g0327 2 2946537 2958732 ECH