Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0326 ATGGCTGAGTGGAGCAGAGAGCAGGAGAAAGCATTTGAAAATGCCATTGCAAGTTATGCTGAAGATGATCCATATCGATGGGAGAAGATTGCGGCTGCTGTACCAGGGAAAGCAATCAAAGAAGTTAAACATCATTATCTGATCTTGCTTGATGATGTTTTGAATATTGAATCTGGTCTTGTACCTCCACCAGATTATGATTCATTTTCACAGGGCTCAAAAAGTCATGCTTCAAGATCTGATAATCAGGAACGACGAAAGGGTACTCCTTGGACTGAGGATGAACACAAGCAGTTTCTTCTTGGGTTGGAAAAGTTTGGAAAAGGTGACTGGAGAAGCATATCAAGGCACTTCGTGGTGACAAGAACAGCCACACAAGTTGCAAGCCATGCACAAAAATACTTCCTTCGTTTGAATTCGACTTCTAATAAAAAGCGATCCAGCATACATGATATCACCATTGACAACAATGAAGGCACTTCAGCAGCACCTCAAGGACCAATTACTGGTCAGAAAAATCCTTGA 525 0.4171 MAEWSREQEKAFENAIASYAEDDPYRWEKIAAAVPGKAIKEVKHHYLILLDDVLNIESGLVPPPDYDSFSQGSKSHASRSDNQERRKGTPWTEDEHKQFLLGLEKFGKGDWRSISRHFVVTRTATQVASHAQKYFLRLNSTSNKKRSSIHDITIDNNEGTSAAPQGPITGQKNP* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0326 174 MobiDBLite consensus disorder prediction 65 94 - -
Lja2g0326 174 CDD SANT 3 50 IPR001005 -
Lja2g0326 174 Pfam Myb-like DNA-binding domain 90 135 IPR001005 -
Lja2g0326 174 Pfam Myb-like DNA-binding domain 3 47 IPR001005 -
Lja2g0326 174 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Lja2g0326 174 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Lja2g0326 174 SMART sant 87 137 IPR001005 -
Lja2g0326 174 SMART sant 1 52 IPR001005 -
Lja2g0326 174 Gene3D - 2 48 - -
Lja2g0326 174 Gene3D - 89 141 - -
Lja2g0326 174 MobiDBLite consensus disorder prediction 143 174 - -
Lja2g0326 174 PANTHER TRANSCRIPTION FACTOR KUA1 2 73 - -
Lja2g0326 174 PANTHER TRANSCRIPTION FACTOR MYBS1 72 172 - -
Lja2g0326 174 PANTHER TRANSCRIPTION FACTOR KUA1 72 172 - -
Lja2g0326 174 MobiDBLite consensus disorder prediction 78 94 - -
Lja2g0326 174 SUPERFAMILY Homeodomain-like 85 140 IPR009057 -
Lja2g0326 174 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 137 IPR006447 GO:0003677
Lja2g0326 174 PANTHER TRANSCRIPTION FACTOR MYBS1 2 73 - -
Lja2g0326 174 CDD SANT 90 135 IPR001005 -
Lja2g0326 174 ProSiteProfiles SANT domain profile. 91 139 IPR017884 -
Lja2g0326 174 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Lja2g0326 174 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 139 IPR017930 -
Lja2g0326 174 SUPERFAMILY Homeodomain-like 3 58 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0326 Lja-Chr2 2925020 2925544 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g0326 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0326 - - lja:Lj2g3v1890900.1 358.607