Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0325 ATGGCAGAGGAAGATAGCTACAACCTCTCTTCTTCTTCCTCACAGGACGAAATCTCCCTTTTCCTCCGTCAGATTCTTCTCCGTTCATCATCCAACCCCAACATGCCTCCATCCTCCAACTCACCCCTTCATACCACCGCCGGAGCCTATCTCTCCGCTTCATCTCAGCCTCTGCCTGCTGCAAATGTCTCTTCCTCCTCTCTAGGTGTCAGTGAGAATGAGGCTGATGAATATGACTGTGAAAGTGAGGAGGGTGTTGAAGCATTGGGTGAAGAGGTTAGGACAAAGTCTCTTCCTTCTTCTAGGAGCTCATCTAAAAGGACTAGAGCAGCAGAGGTTCATAATTTGTCTGAAAAGAGGAGAAGGAGCAGGATCAACGAGAAGATGAAGGCTTTGCAAAATCTGATTCCAAACTCTAACAAGACTGATAAGGCTTCCATGCTTGATGAAGCTATTGATTACCTTAAACAGCTTCAGCTCCAAGTACAAATGCTGTCAATGAGAAATGGATTGAGTTTGCATCCTATGTGCTTCTCTGAAGGCTTGCAGCCTCTGCAATTGTCTCGGATGAGTATGGATTCAAGTGAAGGAAACAAGTCTACCCTTTTAAACATGACTACTACTCTGCCTCTGCAACAAGAGAACCCCTTGCACTATGCATCATCCAATCTCAATCTACCTAGCAAACAAGTTTTGCCAAATAAGCCATCAGCGTCCCATCATTCATTTGTTAACAACTTGGAAACTTCTTTCTGGCAGGAACCGCAAATCCTGGCACCGCACAGAGGATCTTCCGAGGCAATACATGGGGAAGTCATATGGCAGCACCAGCAATCAAATGCAATCCATTCAGATACCAATCCAATAGGTGGTTCTCAAGGTGTAAAAGAATTGGAGGCTGACATATTACCTACCGTGTCACTTTCATTTGGGATGCGAACTTCCGACCCTGAGGACAACAACCCCTTGCAACCATGCATTGCGGGAAGAGATCAGTCAGGAGTGATCATAAGAAGTAGCGAGCCTAACATAATTCTTACATCACAGTGA 1050 0.4543 MAEEDSYNLSSSSSQDEISLFLRQILLRSSSNPNMPPSSNSPLHTTAGAYLSASSQPLPAANVSSSSLGVSENEADEYDCESEEGVEALGEEVRTKSLPSSRSSSKRTRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIDYLKQLQLQVQMLSMRNGLSLHPMCFSEGLQPLQLSRMSMDSSEGNKSTLLNMTTTLPLQQENPLHYASSNLNLPSKQVLPNKPSASHHSFVNNLETSFWQEPQILAPHRGSSEAIHGEVIWQHQQSNAIHSDTNPIGGSQGVKELEADILPTVSLSFGMRTSDPEDNNPLQPCIAGRDQSGVIIRSSEPNIILTSQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0325 349 MobiDBLite consensus disorder prediction 107 121 - -
Lja2g0325 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Lja2g0325 349 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 10 286 IPR031066 -
Lja2g0325 349 Pfam Helix-loop-helix DNA-binding domain 113 159 IPR011598 GO:0046983
Lja2g0325 349 CDD bHLH_AtPIF_like 109 171 - -
Lja2g0325 349 SMART finulus 115 164 IPR011598 GO:0046983
Lja2g0325 349 Gene3D - 104 169 IPR036638 GO:0046983
Lja2g0325 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 169 IPR036638 GO:0046983
Lja2g0325 349 MobiDBLite consensus disorder prediction 29 72 - -
Lja2g0325 349 PANTHER TRANSCRIPTION FACTOR SPATULA 10 286 - -
Lja2g0325 349 MobiDBLite consensus disorder prediction 29 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0325 Lja-Chr2 2920706 2923431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0325 73 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 67.647 2.69e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g0325 HLH 4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0325 - - lja:Lj2g3v1890910.1 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0325 2 2920706 2923431 Lja2g0325 2 2920706 2923431 ECH