Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0319 ATGTGGGATCTGAATGGCTCCCCTGTTAAGAGAAAAGATTCAGAATCAGAGGAGTGTTCGAATTCGTTTAAGAGGCTTGGATCTCTTTCCAATTCAAGCTCCTCTGCGGTGGTCGTTGAAGACGGATCGGAAGTTGAAGAAGACGGTGGCGCCGGAGCTGAACTGGTCGGCAGAAGAAACAAGATATTCGGATTCTCTGTCACCCATGATGATGATAACGAGCCCATGGATACTGACAACCCGCCGGTGACCCGCCAGTTTTTTCCGGTGGAGGGGGCGGACACGGCGACGGCGACACCCTCCGGTGGTGGTGGTGGAAGCTCTTCTTCCTTCCCTCGTGCTCACTGGGTAGGAGTTAAATTCTGTCAATCGGAAGCTCCCGGTGCCGGAAACGGAAAATCAGTTGAAGTGTCGCAGCCGTTGAAGAAGAGTCGCCGAGGACCAAGGTCGCGTAGCTCACAGTATAGAGGAGTTACTTTTTACAGAAGAACTGGTCGATGGGAGTCTCACATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACTGCACATGCTGCTGCTCGAGCATATGATAGAGCTGCCATTAAGTTCCGGGGAGTAGAGGCTGACATAAACTTCAACATTGAAGACTATGAAGATGACTTGAAGCAGATGAGTAATCTAACTAAGGAAGAGTTTGTGCACGTACTTCGCCGGCAAAGCACGGGATGTCCGAGAGGAAGCTCCAAGTATAGAGGTGTAACTTTGCATAAGTGTGGAAGATGGGAGGCTAGAATGGGCCAATTTTTAGGCAAAAAGTATGTTTATCTGGGTCTGTTTGACACTGAGGTTGAAGCTGCAAGGGCATATGACAAGGCAGCAATAAAATCTAATGGCAAAGAGGCCGTCACCAATTTCGACCCAAGCATCTATGATAATGAGCTCAATTCTGAATCCTCGGGCAAACCTGCTGATCATAATCTGGATTTGAGTTTGGGTAATTCAGGCTCTAATAAGCATAGCAATGGTCAAGCATTGGGGAATCACGCCCCAAATACTGCGAATGATCAGCATCTGCCACCACCAGAATCTCAGTGGCGAAATGGGGGAAACAAGGCTAAGCTGGTGAATATACTACCAAAACCATGTAGTATAAGCAACATGGAAGGCTATGTAAATGGACACGGAGAGAGTGAAGCCTCATGGCTTCTAAGCCAAACTCACCTCCAATCTCCACCCACCAATGCAATTCACAGATATGGTCCATATAGATCACCAGGAGAGCCTCAATTTCTTCACAATTTTGCACACCTTCACCCCCAAAATTTTCATGTTCCGAGCAGCAGCAGCAATGGAGGCCGAATTGGAAGTGATCTTTCACTATCAATGTCCGATCAGCAACAGCAACAGCAACAGTGGCAAATGGGACCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCACAGATAAGACCATCCCAAGTTTGGCTGCACAAAAATGGATTCCACCCTCTCATGAGACCCTCTTAA 1530 0.4778 MWDLNGSPVKRKDSESEECSNSFKRLGSLSNSSSSAVVVEDGSEVEEDGGAGAELVGRRNKIFGFSVTHDDDNEPMDTDNPPVTRQFFPVEGADTATATPSGGGGGSSSSFPRAHWVGVKFCQSEAPGAGNGKSVEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGCPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKSNGKEAVTNFDPSIYDNELNSESSGKPADHNLDLSLGNSGSNKHSNGQALGNHAPNTANDQHLPPPESQWRNGGNKAKLVNILPKPCSISNMEGYVNGHGESEASWLLSQTHLQSPPTNAIHRYGPYRSPGEPQFLHNFAHLHPQNFHVPSSSSNGGRIGSDLSLSMSDQQQQQQQWQMGPPHLLATAAASSGFPPQIRPSQVWLHKNGFHPLMRPS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0319 509 MobiDBLite consensus disorder prediction 1 20 - -
Lja2g0319 509 MobiDBLite consensus disorder prediction 128 154 - -
Lja2g0319 509 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Lja2g0319 509 PRINTS Ethylene responsive element binding protein signature 247 258 IPR001471 GO:0003700|GO:0006355
Lja2g0319 509 Gene3D AP2/ERF domain 153 212 IPR036955 GO:0003700|GO:0006355
Lja2g0319 509 Gene3D AP2/ERF domain 245 304 IPR036955 GO:0003700|GO:0006355
Lja2g0319 509 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 507 - -
Lja2g0319 509 MobiDBLite consensus disorder prediction 310 366 - -
Lja2g0319 509 ProSiteProfiles AP2/ERF domain profile. 154 210 IPR001471 GO:0003700|GO:0006355
Lja2g0319 509 MobiDBLite consensus disorder prediction 1 87 - -
Lja2g0319 509 MobiDBLite consensus disorder prediction 64 78 - -
Lja2g0319 509 MobiDBLite consensus disorder prediction 21 39 - -
Lja2g0319 509 SUPERFAMILY DNA-binding domain 245 305 IPR016177 GO:0003677
Lja2g0319 509 ProSiteProfiles AP2/ERF domain profile. 246 303 IPR001471 GO:0003700|GO:0006355
Lja2g0319 509 MobiDBLite consensus disorder prediction 310 360 - -
Lja2g0319 509 CDD AP2 154 211 IPR001471 GO:0003700|GO:0006355
Lja2g0319 509 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Lja2g0319 509 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Lja2g0319 509 SMART rav1_2 246 309 IPR001471 GO:0003700|GO:0006355
Lja2g0319 509 CDD AP2 245 305 IPR001471 GO:0003700|GO:0006355
Lja2g0319 509 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 507 - -
Lja2g0319 509 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Lja2g0319 509 Pfam AP2 domain 245 292 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0319 Lja-Chr2 2875296 2878754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0319 1 336 AP2-EREBP Transcription Factor Family AT4G36920 70.000 4.03e-139 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja2g0319 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0319 K09284 - gmx:100786333 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0319 2 2875296 2878754 Lja2g0319 2 2875296 2878754 ECH
Lja2g0319 2 2875296 2878754 Lja4g3367 4 63526302 63530233 PCT