Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0306 ATGGAACCTACTCCTCCAGCTTCTAACACTCAACCATCTGGCATGTCATCCTGGGCAAGAAATCTGAAATCCCTTGGGCTCGGGGCGTCGCAGCAGAACTCACAGGTTGAAAATACCGGTGGCATGTCGGCTTTTGCTCGCTTGACAGGCGGGATGGGATTAGGAATGCCCTCCTCGATTGAGGCTGCTCCGGGAAGTTCAGGAGCTGATCAGCCTAATTTAATTGAATCGTTCACCAAAGGGTTGGTGGACTCGTCTAAGACCGCAGTAAAGGCGGTGCAGACCAAAGCTCGCCATATTGTCTCTCAAAATAAACGCAGATACCAGGAAAATGGATTTGATTTGGATATGACATACATCACTGAAAATATAATTGCTATGGGGTTTCCGGGTGGCGATCTTAGCTCTGGACTTTTTGGATACATTGAGGGTTTCTATCGCAATCACATGGAAGAAGTAATTAAGTTTTTCGAAACTCATCATAAGGGAAAGTACAAAGTATACAATCTTTGCTCAGAGAGGTTGTATGATGGATCACTATTCCAGGGAAAGGTTGCAAGTTTCCCATTTACTGATCATAATTGCCCTCCTATTCAACTTATATTGTCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACAGGACTGATGATTTGTAGCCTTCTTATGTTTCTTAAATTCTTCCCAACTGCGGAGGAAGCCATTGATTACTTCAACCAGAAACGATGTATTGATGGAAAGGCTCTAGTTATCCCTAGTCAGATCAGATATGTCAAATACTTTGAACGGACTTTAACACACTTTAATGGAGAGGTCCAGCCTGGACGAAGGTGCATGCTAAGAGGGTTTAGGCTTCACAAATGCCCTTATTGGGTTAGACCATCCATTACAATATCTGATCATAATGGAATTCTTTTCACAACTAGAAAGCATCCCAAAACAAAGGATTTAATGCCAGAAGATTTCTGGATAAATTCACCAAAGAAGGGAATAGTGGTCTTTGCAATACCAGGAGAGCCTGGTCTCGCAGAGTTGATTGGGGACTTCAAAATTCATTTTCATGATCGACAGGGAGATTTCTACTGTTGGCTGAATACAGCAATGACAGAAAACAGAAAAGTTTTAGATGGCTCGGATCTTGATGGTTTTGACAAGAGAAAGATCCCTGCTCCAGGGTTCCAGGTTGAAATTGTGATGGTAGACTATACTGGCACCCTACCTACAAGGACAAAAGCCAATCCTGCAAGCAAAGGATCTGATAGTAACACTAGCAATGTCGTAGCCGGTGCAAGGCCTACAACTAATGCAAGTGAGAGTAAGGTCCCTAGAAATGGAGATGATGATGTATTCTCGGATAGTGATGAAGAGGAGGCTAAGGGTACACGAAGGAGGGAAACTGCAGCTGAGTACAAATATATGGCTTCTCATCAAGCATCTGAGGCCACTACAGACCATGTAGGAATGTTGACACACACAACAGACCAGTTGTCACTCCAGCATGCGGAACACATGAAAAATGAAGAATCAAACACAGATAAACTAAAACATACAGGCCCCAGTACCACAAACATGGAATCTGCTGGGGCCAGTGAAATCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGGAGATGAAGATTTTGAGAGTGATTGA 1710 0.4298 MEPTPPASNTQPSGMSSWARNLKSLGLGASQQNSQVENTGGMSAFARLTGGMGLGMPSSIEAAPGSSGADQPNLIESFTKGLVDSSKTAVKAVQTKARHIVSQNKRRYQENGFDLDMTYITENIIAMGFPGGDLSSGLFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVASFPFTDHNCPPIQLILSFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLMFLKFFPTAEEAIDYFNQKRCIDGKALVIPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHNGILFTTRKHPKTKDLMPEDFWINSPKKGIVVFAIPGEPGLAELIGDFKIHFHDRQGDFYCWLNTAMTENRKVLDGSDLDGFDKRKIPAPGFQVEIVMVDYTGTLPTRTKANPASKGSDSNTSNVVAGARPTTNASESKVPRNGDDDVFSDSDEEEAKGTRRRETAAEYKYMASHQASEATTDHVGMLTHTTDQLSLQHAEHMKNEESNTDKLKHTGPSTTNMESAGASEIKAIAADASVFSFGDEDFESD* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0306 569 MobiDBLite consensus disorder prediction 426 457 - -
Lja2g0306 569 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 6 569 - -
Lja2g0306 569 ProSiteProfiles C2 tensin-type domain profile. 292 419 IPR014020 -
Lja2g0306 569 MobiDBLite consensus disorder prediction 514 543 - -
Lja2g0306 569 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 119 285 IPR029021 -
Lja2g0306 569 CDD PTP_PTEN 116 280 IPR045101 GO:0016791
Lja2g0306 569 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 6 569 - -
Lja2g0306 569 Gene3D Protein tyrosine phosphatase superfamily 91 288 IPR029021 -
Lja2g0306 569 ProSitePatterns Tyrosine specific protein phosphatases active site. 222 232 IPR016130 GO:0016311|GO:0016791
Lja2g0306 569 Pfam Protein-tyrosine phosphatase 192 245 IPR000242 GO:0004725|GO:0006470
Lja2g0306 569 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 199 259 IPR000387 GO:0016311|GO:0016791
Lja2g0306 569 MobiDBLite consensus disorder prediction 426 483 - -
Lja2g0306 569 MobiDBLite consensus disorder prediction 515 531 - -
Lja2g0306 569 ProSiteProfiles Phosphatase tensin-type domain profile. 106 285 IPR029023 -
Lja2g0306 569 SMART PTEN_C2_2 290 418 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0306 Lja-Chr2 2786736 2792049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0306 3 569 Protein tyrosine phosphatase (PTP) family AT3G19420 62.373 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0306 K01110 - gmx:100801622 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0306 2 2786736 2792049 Lja2g0306 2 2786736 2792049 ECH
Lja2g0306 2 2786736 2792049 Lja5g0382 5 3378155 3384208 PCT