Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0305 ATGCCTCAACAACACTCTCCCTCTTCCCTCAACATCCTTCTCTGCCAAGAACAATGCACTTTCCACAACAACACTCTCCCATCTTTACCTTTGATTTCGCTCGACAATGAAGACGATTACCTCACCACTCTAATCTCCAAAGAGAAAGCAACCCATTTCCATTCCCCTGCTGATGGAATCCTAGCTTCTCATGAGGGTCATCGCCATGATGCTGTTCGCTGGATTTCTGGAGTTTCAGCTTTCTATGGTTTCACTGCTTTGACCACTGTTCTTGCAGTTAACTACTTTGACAGGTTCGTATCGACCCTGAAGTTTCAGATGGATAAGCCATGGATGACTCACCTCACTGCAGTCACCTGTTTGTCTCTTGCTGCAAAAATGGAAGAAACCCAAGTGCCACTTCTTTTGGACCTTCAGCAAGTGGAGGAATCAGAGTTCTTGTTTGAAGCAAAGACCATACAGAGAATGGAGCTACTTGTGTTGTCAACTCTTAATTGGAGAATGAACCCTGTTACCCCAATTTCCTTCTTTCAATGCGTTGTCACAAGGCTTGGTTTCATGAATGGCTTGCTTTCTGAGTTTCTGTGTAGGTGCGAACGAGTTCTTCTCTGTCTCATTGTGGATTCAAGGGTTATGAGCTATCCCCCTTCTACATTGGCTGCTGCAACAATGATCCATATCATTAAAGAGATTGAACCGTTTAATGCAACAGAATACACAGATCAACTTTTGGATTTACTCAAAATTAGTGAGGAACAAGTGAATGAGTGCTACAAAATCATGCTGAAACTATTAGTTTGCTGTGGTGATGTTCACAATCTTCACCAAAAGCGTAAACGCCTTTATGAACCAAGTAGCCCCGGTGGAGTCATTGATGCATCTTTCAGCTGTGACAGCTCAAATGATTCATGGACCGTGGCATCACCATTATCACTCTCAGTGGAGCCTGTGTTTAAGAGGAGCAAAGCTCAAGATCAGCATATGCGATTGCCTTCAATAAATCGCATGTCTGTTCATCTTCTAAATAGTCCTCGTTAA 1038 0.4316 MPQQHSPSSLNILLCQEQCTFHNNTLPSLPLISLDNEDDYLTTLISKEKATHFHSPADGILASHEGHRHDAVRWISGVSAFYGFTALTTVLAVNYFDRFVSTLKFQMDKPWMTHLTAVTCLSLAAKMEETQVPLLLDLQQVEESEFLFEAKTIQRMELLVLSTLNWRMNPVTPISFFQCVVTRLGFMNGLLSEFLCRCERVLLCLIVDSRVMSYPPSTLAAATMIHIIKEIEPFNATEYTDQLLDLLKISEEQVNECYKIMLKLLVCCGDVHNLHQKRKRLYEPSSPGGVIDASFSCDSSNDSWTVASPLSLSVEPVFKRSKAQDQHMRLPSINRMSVHLLNSPR* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0305 345 Pfam Cyclin, N-terminal domain 44 169 IPR006671 -
Lja2g0305 345 CDD CYCLIN 67 161 IPR013763 -
Lja2g0305 345 PANTHER CYCLINS 23 329 IPR039361 -
Lja2g0305 345 SUPERFAMILY Cyclin-like 153 271 IPR036915 -
Lja2g0305 345 SMART Cyclin_C_2 171 299 IPR004367 -
Lja2g0305 345 SMART cyclin_7 73 162 IPR013763 -
Lja2g0305 345 SMART cyclin_7 175 263 IPR013763 -
Lja2g0305 345 Gene3D - 65 169 - -
Lja2g0305 345 Gene3D - 170 259 - -
Lja2g0305 345 PANTHER CYCLIN-D3-2 23 329 - -
Lja2g0305 345 Pfam Cyclin, C-terminal domain 171 279 IPR004367 -
Lja2g0305 345 SUPERFAMILY Cyclin-like 34 169 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0305 Lja-Chr2 2781901 2783292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0305 26 335 Core Cell Cycle Gene Families AT5G67260 50.157 1.24e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0305 K14505 - gmx:100785030 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0305 2 2781901 2783292 Lja4g3382 4 63957859 63959914 ECH
Lja1g4133 1 52533623 52535296 Lja2g0305 2 2781901 2783292 ECH
Lja2g0305 2 2781901 2783292 Lja2g0305 2 2781901 2783292 ECH
Lja2g0305 2 2781901 2783292 Lja5g0383 5 3386211 3388611 PCT
Lja4g3382 4 63957859 63959914 Lja2g0305 2 2781901 2783292 PCT