LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g0289	ATGCCTCCTCAAGATAACGAACTACCTCTGCTACTTAATTCCCGAGAAGAAGAAACCGCTTACGATTCATCTCAGAAGGTCGTGGTGGTTGGGATCGACGAGCGCGACGACGGTGACCTTTCGCCTCCGTTTTCATGGAAGAGGCTCTGGCTCTACAGTGGTCCTGGTTTTCTGATGAGCATCGCTTTTCTCGATCCTGGGAATCTCGAGGGGGATCTTCAGTCTGGTGCCATTGCTGGCTACTCGCTGCTTTGGCTCCTCATGTGGGCCACCGCTATGGGACTCATTATTCAGCTCTTGTCGGCGAGGCTTGGTGTCGCCACCGGGAGGCACTTGGCGGAGCTTTGCAGGGATGAGTATCCGTTTTGGGCTAGGATTGTGCTGTGGTTGATGACTGAGGTGGCTTTGATTGGTTCTGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATCAGGATTCTGAGTAATGGTCTTGTTCCTCTCTGGGCTGGGGTTGTCATTACAGCTTTAGATTGTTTTGTTTTCCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGAAGCATTTTTCGCGGTTCTGATTGGTTTAATGGCTCTCTCATTTGCGTGGATGTTTGGTAAAGCAAAGCCTGATGGTGTTGATGTTCTTCTTGGTGTATTGGTCCCTAAACTGAGCTCCAGAACTATACAGCAAGCTGTTGGAGTTGTGGGCTGTATTATTATGCCTCACAATGTATACTTGCATTCTGCTCTTGTTCAATCAAGGCAGATTGACCACACCAAGAAAGGCCGTGTCCAAGAAGCTCTTAATTACTACTCTATCGAGTCCACTATTGCTCTTGTAGTCTCCTTTGTCATTAATATATTTGTCACAACCGTGTTTGCTAAGGGCTTTTATGGAACTGAAATAGCAAACCGCATTGGTCTTGTAAATGCAGGGCAGTATCTTCAGGAGAAGTATGGGGGTGGAGTATTCCCAATCCTATATATATGGGGTATTGGGTTATTAGCAGCCGGTCAAAGTAGCACTATTACTGGTACATATGCAGGACAATTCATTATGGGGGGTTTTCTGAATTTAAGGTTGAAAAAATGGATGAGGGCATTAATTACACGGAGTTTTGCAATCATTCCAACCATGATTGTCGCTCTTATATTTGATACCTCAGAGGAATCATTAGATGTTCTAAATGAATGGCTTAATGTTCTTCAGTCAGTGCAGATCCCCTTTGCACTCATTCCCTTGCTTTGTTTGGTGTCAAAGGAACAGATAATGGGCAGTTTCAAAATTGGTCCTGTCCTCAAGATTGTTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGCTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAGTATTCGCTACTATAGTATGCGTATTAACAGCTGCATATGTTGCGTTTGTACTTTACCTTATTATACGGGACATCGCATTTTCACCTTGGAACAGTTTAACACGATCTAAGACAGTTGACACAGGGAATTGA	1524	0.4436	MPPQDNELPLLLNSREEETAYDSSQKVVVVGIDERDDGDLSPPFSWKRLWLYSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLIIQLLSARLGVATGRHLAELCRDEYPFWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGLVPLWAGVVITALDCFVFLFLENYGVRKLEAFFAVLIGLMALSFAWMFGKAKPDGVDVLLGVLVPKLSSRTIQQAVGVVGCIIMPHNVYLHSALVQSRQIDHTKKGRVQEALNYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFKIGPVLKIVSWLVAALVIVINGYLLLEFFSSEVNGAVFATIVCVLTAAYVAFVLYLIIRDIAFSPWNSLTRSKTVDTGN*	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g0289	507	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	9	505	-	-
	Lja2g0289	507	PRINTS	Natural resistance-associated macrophage protein signature	367	384	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	PRINTS	Natural resistance-associated macrophage protein signature	128	154	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	PRINTS	Natural resistance-associated macrophage protein signature	158	177	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	PRINTS	Natural resistance-associated macrophage protein signature	183	204	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	PRINTS	Natural resistance-associated macrophage protein signature	339	358	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	PRINTS	Natural resistance-associated macrophage protein signature	232	255	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	PRINTS	Natural resistance-associated macrophage protein signature	401	420	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	Pfam	Natural resistance-associated macrophage protein	70	431	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	9	505	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	Hamap	Divalent metal cation transporter MntH [mntH].	35	457	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja2g0289	507	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	48	425	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g0289	Lja-Chr2	2653347	2656467	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g0289	1	494	Inorganic Solute Cotransporters	AT2G23150	77.645	0.0	790

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g0289	K21398		-	gmx:100807811	892.878

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g0289	2	2653347	2656467	Lja2g0289	2	2653347	2656467	ECH
	Lja2g0289	2	2653347	2656467	Lja4g3405	4	64401030	64415201	PCT