Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0275 ATGGCATCATGGCACGTGAGAGATATACGCACGAACCATCATCACACAACTACTAATACCACTCTTTTCTTCGCTCCTTGCTTGCTAGCTATCGTGCACCTCACCCTGCTAGCGTGCGCATGTCCCCACCCATCGAATCAAACGCCACCATCGCTTCAAATCCGATCACCCATCGTTGAGATCTCAGATTCAGAGCCTCAATCCATGTCGAAGGCGCGTGTTTACACCGACATCAATGTTCTTCGTCCCAAAGAGTATTGGGATTACGAGTCTCTCACCGTTCAATGGGGTGATCAAGATGATTACGAGGTTGTGCGAAAAGTGGGAAGGGGGAAATATAGCGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAGAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGACCAACATTCAAAAACTCCTAGCTTGATATTTGAGTATGTCAACAGTACAGACTTCAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTAAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAGTTGCGGAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGAGTAGCTTCAAGATATTTTAAGGGGCCTGAGCTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTCGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAGCCTTTCTTTTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTACTTGGAACTGATGAACTGAATGCATATCTTAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGCAAGCCCTGGTCTAAATTTATCAATCCTGATAATCAGCACCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGGTATGATCACCAGGACAGGCTAACAGCAAGAGAAGCAATGGCACATCCTTATTTTTCTCAAGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1206 0.4196 MASWHVRDIRTNHHHTTTNTTLFFAPCLLAIVHLTLLACACPHPSNQTPPSLQIRSPIVEISDSEPQSMSKARVYTDINVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINPDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0275 401 Pfam Protein kinase domain 102 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0275 401 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Lja2g0275 401 PANTHER CASEIN KINASE II SUBUNIT ALPHA 59 401 IPR045216 GO:0004674|GO:0006468
Lja2g0275 401 SMART serkin_6 102 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0275 401 Gene3D Phosphorylase Kinase; domain 1 102 178 - -
Lja2g0275 401 CDD STKc_CK2_alpha 83 387 IPR045216 GO:0004674|GO:0006468
Lja2g0275 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lja2g0275 401 Gene3D Transferase(Phosphotransferase) domain 1 179 387 - -
Lja2g0275 401 ProSiteProfiles Protein kinase domain profile. 102 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g0275 401 SUPERFAMILY Protein kinase-like (PK-like) 71 391 IPR011009 -
Lja2g0275 401 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 59 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0275 Lja-Chr2 2539933 2545908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0275 100 387 Core Cell Cycle Gene Families AT1G76540 29.450 2.97e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lja2g0275 Pkinase 1.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0275 K03097 - bvg:104894926 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0275 2 2539933 2545908 Lja2g0275 2 2539933 2545908 ECH
Lja2g0275 2 2539933 2545908 Lja4g3419 4 64588376 64593509 PCT