Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0268 ATGAGTTGCAACGGTTGCCGAGTCCTCCGTAAGGGTTGCAGCGAGTCATGCATCTTGCGCCCTTGCCTGCAGTGGATCGACACCGCCGAAGCACAAGGCCACGCCACCGTCTTCGTCGCCAAATTCTTCGGCCGCGCCGACCTCATGTCCTTCATTTCCAACGTCCCTCAACCACAAAGACCATCTCTGTTTCAATCTCTGTTGTTTGAAGCGTGCGGACGAACTGTTAACCCTGTGAACGGCGCCGTTGGTCTTCTCTGGACCGGAAACTGGCACGTGTGCCAGGCCGCGGTTGAGACGGTTCTCCGTGGCGGCACACTCAAACCGTTGCCGGAGCTTCTAGGCCTGGACGCTCCCTCTCACGTTCCCACCGCCGCCGATGACGCGTCCGAAGGGGAAGTCACATATGACACGTGGAGGATCCGAGATCCGAACCCGAATGCTCGGTTAACAAACTCGCGGTCTTCTGCCGGTAAACGCCAGCGGCCGGAGGAGCTCGCGAAGCTTCAGACGACGACTGATCTCAATCTCCGGTTGACGCCGGGTTTCCTGCAGAACGTGTCGTCATACGGTTGCAAAAGGGAAGCTCGCCGGCCGGGATCGCCGTCGATGAACTCGGAGGAGTCCGTGACGACGACGGCGTGCTTGGGAAGCGGGATCGGAGACCACTGTTCTCGCGACGAGGATCGGAAAGTGCTGAAGCTTTTCGTTTGA 714 0.5924 MSCNGCRVLRKGCSESCILRPCLQWIDTAEAQGHATVFVAKFFGRADLMSFISNVPQPQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLKPLPELLGLDAPSHVPTAADDASEGEVTYDTWRIRDPNPNARLTNSRSSAGKRQRPEELAKLQTTTDLNLRLTPGFLQNVSSYGCKREARRPGSPSMNSEESVTTTACLGSGIGDHCSRDEDRKVLKLFV* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0268 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 237 - -
Lja2g0268 237 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lja2g0268 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 237 - -
Lja2g0268 237 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Lja2g0268 237 MobiDBLite consensus disorder prediction 141 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0268 Lja-Chr2 2483476 2485050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0268 1 237 AS2 family AT4G37540 54.800 3.32e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja2g0268 LOB 2.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0268 - - gmx:100816189 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0268 2 2483476 2485050 Lja4g3428 4 64855015 64856724 ECH
Lja2g0268 2 2483476 2485050 Lja2g0268 2 2483476 2485050 ECH
Lja2g0268 2 2483476 2485050 Lja5g0439 5 3838550 3839954 PCT
Lja4g3428 4 64855015 64856724 Lja2g0268 2 2483476 2485050 PCT